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authorRicardo Wurmus <rekado@elephly.net>2019-03-29 14:59:23 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-29 17:13:45 +0100
commit229f97c37aef0f50d144524275315fd36cd5973a (patch)
tree7fe7657e25779865526489fd76d59270dbad6959 /gnu/packages
parent051e8e1a5bec01952012cf7f1903cd72add0e25c (diff)
downloadpatches-229f97c37aef0f50d144524275315fd36cd5973a.tar
patches-229f97c37aef0f50d144524275315fd36cd5973a.tar.gz
gnu: Add r-motiv.
* gnu/packages/bioconductor.scm (r-motiv): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6df46ef379..63a1c9923c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3209,3 +3209,34 @@ fitting a three-component normal mixture on z-scores.")
"rGADEM is an efficient de novo motif discovery tool for large-scale
genomic sequence data.")
(license license:artistic2.0)))
+
+(define-public r-motiv
+ (package
+ (name "r-motiv")
+ (version "1.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MotIV" version))
+ (sha256
+ (base32
+ "1qrpydwc5bn8f0843qkyhw6920xk8kvq452ird0ij96g6faiv9a8"))))
+ (properties `((upstream-name . "MotIV")))
+ (build-system r-build-system)
+ (inputs
+ `(("gsl" ,gsl)))
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-iranges" ,r-iranges)
+ ("r-lattice" ,r-lattice)
+ ("r-rgadem" ,r-rgadem)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/MotIV/")
+ (synopsis "Motif identification and validation")
+ (description
+ "This package is used for the identification and validation of sequence
+motifs. It makes use of STAMP for comparing a set of motifs to a given
+database (e.g. JASPAR). It can also be used to visualize motifs, motif
+distributions, modules and filter motifs.")
+ (license license:gpl2)))