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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-06-02 12:00:10 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-06-02 13:39:10 +0200 |
| commit | d73c5728f345174e9493a25646cd3d1a716fb8b5 (patch) | |
| tree | 129f5e06c25f0d7dafd92d09c318b62f1628da9f /gnu/packages | |
| parent | c76e8baf9e57a45c19ccc0134499b493b55ea8a9 (diff) | |
| download | patches-d73c5728f345174e9493a25646cd3d1a716fb8b5.tar patches-d73c5728f345174e9493a25646cd3d1a716fb8b5.tar.gz | |
gnu: r-rhdf5: Update to 2.24.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0.
[arguments]: Remove.
[propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib.
[inputs]: Remove perl.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 4 insertions, 25 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9138671d2f..ce4ff64af6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8797,39 +8797,18 @@ of gene-level counts.") (define-public r-rhdf5 (package (name "r-rhdf5") - (version "2.22.0") + (version "2.24.0") (source (origin (method url-fetch) (uri (bioconductor-uri "rhdf5" version)) (sha256 (base32 - "145858qg1xan6imxcbprzq3yn3mdf532aahdr6cibvdjg47hs4c1")))) + "15cmmchhk8bnp94gxg0zk9qyzdjx5kv16dzpbnb62mkq7ydmifx6")))) (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'unpack-smallhdf5 - (lambda* (#:key outputs #:allow-other-keys) - (system* "tar" "-xzvf" - "src/hdf5source/hdf5small.tgz" "-C" "src/" ) - (substitute* "src/hdf5/configure" - (("/bin/mv") "mv")) - ;; Remove timestamp and host system information to make - ;; the build reproducible. - (substitute* "src/hdf5/src/libhdf5.settings.in" - (("Configured on: @CONFIG_DATE@") - "Configured on: Guix") - (("Uname information:.*") - "Uname information: Linux\n") - ;; Remove unnecessary store reference. - (("C Compiler:.*") - "C Compiler: GCC\n")) - #t))))) (propagated-inputs - `(("r-zlibbioc" ,r-zlibbioc))) + `(("r-rhdf5lib" ,r-rhdf5lib))) (inputs - `(("perl" ,perl) - ("zlib" ,zlib))) + `(("zlib" ,zlib))) (home-page "https://bioconductor.org/packages/rhdf5") (synopsis "HDF5 interface to R") (description |