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| author | Ben Woodcroft <donttrustben@gmail.com> | 2016-07-12 16:00:36 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-08-08 22:08:17 +1000 |
| commit | 8b5f4d57005569ee2f1b68a151f5ce8d50a1e17a (patch) | |
| tree | 2427a720fb45ec92fe51f458c99944599b2e5a98 /gnu/packages | |
| parent | 70f1bc051a5e06e14acde6cfe8fcaace656adbf4 (diff) | |
| download | patches-8b5f4d57005569ee2f1b68a151f5ce8d50a1e17a.tar patches-8b5f4d57005569ee2f1b68a151f5ce8d50a1e17a.tar.gz | |
gnu: Add bpp-phyl.
* gnu/packages/bioinformatics.scm (bpp-phyl): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7a6c144e32..0b8424aa34 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -555,6 +555,43 @@ Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools.") (license license:cecill-c)))) +(define-public bpp-phyl + ;; The last release was in 2014 and the recommended way to install from source + ;; is to clone the git repository, so we do this. + ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page + (let ((commit "0c07167b629f68b569bf274d1ad0c4af83276ae2")) + (package + (name "bpp-phyl") + (version (string-append "2.2.0-1." (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "http://biopp.univ-montp2.fr/git/bpp-phyl") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "1ssjgchzwj3iai26kyly7gwkdv8sk59nqhkb1wpap3sf5m6kyllh")))) + (build-system cmake-build-system) + (arguments + `(#:parallel-build? #f + ;; If out-of-source, test data is not copied into the build directory + ;; so the tests fail. + #:out-of-source? #f)) + (inputs + `(("bpp-core" ,bpp-core) + ("bpp-seq" ,bpp-seq) + ;; GCC 4.8 fails due to an 'internal compiler error', so we use a more + ;; modern GCC. + ("gcc" ,gcc-5))) + (home-page "http://biopp.univ-montp2.fr") + (synopsis "Bio++ phylogenetic Library") + (description + "Bio++ is a set of C++ libraries for Bioinformatics, including sequence +analysis, phylogenetics, molecular evolution and population genetics. This +library provides phylogenetics-related modules.") + (license license:cecill-c)))) + (define-public bpp-seq ;; The last release was in 2014 and the recommended way to install from source ;; is to clone the git repository, so we do this. |