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| author | zimoun <zimon.toutoune@gmail.com> | 2019-07-24 20:22:02 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-07-24 23:05:39 +0200 |
| commit | 1502751b3220feda44e34c07c617086538ac1296 (patch) | |
| tree | 6f683e95fcbee68b83a66399b6561f2b85a4392d /gnu/packages | |
| parent | e0cb053edb34cd1cc74a5db1b6e59e6e16c2cfec (diff) | |
| download | patches-1502751b3220feda44e34c07c617086538ac1296.tar patches-1502751b3220feda44e34c07c617086538ac1296.tar.gz | |
gnu: Add r-flowsom.
* gnu/packages/bioconductor.scm (r-flowsom): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ece5097940..ad48ccaebe 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4904,3 +4904,31 @@ with flow cytometry data.") Cytometry data using non-parametric clustering and segmented-regression-based change point detection.") (license license:artistic2.0))) + +(define-public r-flowsom + (package + (name "r-flowsom") + (version "1.16.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "FlowSOM" version)) + (sha256 + (base32 + "03wl3xk7g7vajc4kkrqa0gsbjfxlqr918qi849h5nir31963398l")))) + (properties `((upstream-name . "FlowSOM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-consensusclusterplus" ,r-consensusclusterplus) + ("r-flowcore" ,r-flowcore) + ("r-flowutils" ,r-flowutils) + ("r-igraph" ,r-igraph) + ("r-tsne" ,r-tsne) + ("r-xml" ,r-xml))) + (home-page "https://bioconductor.org/packages/FlowSOM/") + (synopsis "Visualize and interpret cytometry data") + (description + "FlowSOM offers visualization options for cytometry data, by using +self-organizing map clustering and minimal spanning trees.") + (license license:gpl2+))) |