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| author | Leo Famulari <leo@famulari.name> | 2017-06-29 18:02:17 -0400 |
|---|---|---|
| committer | Leo Famulari <leo@famulari.name> | 2017-06-29 18:02:17 -0400 |
| commit | 1024c8119c71ba3ec0122238e8d8254b08d29187 (patch) | |
| tree | ad12a1aac7f828791154a1786d4f245db71b46e9 /gnu/packages/python.scm | |
| parent | 92cb946bd9d78cb8f6aa8418d505f52da6894ab4 (diff) | |
| parent | 95bbaa02aa63bc5eae36f686f1ed9915663aa4cf (diff) | |
| download | patches-1024c8119c71ba3ec0122238e8d8254b08d29187.tar patches-1024c8119c71ba3ec0122238e8d8254b08d29187.tar.gz | |
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/python.scm')
| -rw-r--r-- | gnu/packages/python.scm | 14 |
1 files changed, 13 insertions, 1 deletions
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index ef7b92bd48..34cab7a041 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -6036,7 +6036,19 @@ of the structure, dynamics, and functions of complex networks.") (build-system python-build-system) (arguments ;; TODO: Package missing test dependencies. - '(#:tests? #f)) + '(#:tests? #f + #:phases + (modify-phases %standard-phases + ;; For cluster execution Snakemake will call Python. Since there is + ;; no suitable PYTHONPATH set, cluster execution will fail. We fix + ;; this by calling the snakemake wrapper instead. + (add-after 'unpack 'call-wrapper-not-wrapped-snakemake + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "snakemake/executors.py" + (("\\{sys.executable\\} -m snakemake") + (string-append (assoc-ref outputs "out") + "/bin/snakemake"))) + #t))))) (propagated-inputs `(("python-wrapt" ,python-wrapt) ("python-requests" ,python-requests))) |