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authorEfraim Flashner <efraim@flashner.co.il>2019-01-09 10:48:42 +0200
committerEfraim Flashner <efraim@flashner.co.il>2019-01-09 10:52:41 +0200
commit0e289672503a4e1599ef826d49f2fa5575081942 (patch)
treecdaec28207956090b7cebff805135754dcb22f06 /gnu/packages/ocaml.scm
parent0109b89c5834b5374f248dc3681702180013f41f (diff)
parent6df4d8338d2bf94ab729e3b12e42ace0a06687ae (diff)
downloadpatches-0e289672503a4e1599ef826d49f2fa5575081942.tar
patches-0e289672503a4e1599ef826d49f2fa5575081942.tar.gz
Merge remote-tracking branch 'origin/master' into staging
Diffstat (limited to 'gnu/packages/ocaml.scm')
-rw-r--r--gnu/packages/ocaml.scm562
1 files changed, 145 insertions, 417 deletions
diff --git a/gnu/packages/ocaml.scm b/gnu/packages/ocaml.scm
index e4f17133d7..822075d195 100644
--- a/gnu/packages/ocaml.scm
+++ b/gnu/packages/ocaml.scm
@@ -11,6 +11,7 @@
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Peter Kreye <kreyepr@gmail.com>
;;; Copyright © 2018 Gabriel Hondet <gabrielhondet@gmail.com>
+;;; Copyright © 2018 Kei Kebreau <kkebreau@posteo.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -47,6 +48,7 @@
#:use-module (gnu packages libffi)
#:use-module (gnu packages llvm)
#:use-module (gnu packages m4)
+ #:use-module (gnu packages maths)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages pcre)
@@ -65,6 +67,7 @@
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
#:use-module (guix build-system dune)
+ #:use-module (guix build-system emacs)
#:use-module (guix build-system gnu)
#:use-module (guix build-system ocaml)
#:use-module (guix download)
@@ -633,144 +636,6 @@ arbitrary-precision integer and rational arithmetic that used to be part of
the OCaml core distribution.")
(license license:lgpl2.1+))); with linking exception
-(define-public coq
- (package
- (name "coq")
- (version "8.8.2")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/coq/coq/archive/V"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "0i2hs0i6rp27cy8zd0mx7jscqw5cx2y0diw0pxgij66s3yr47y7r"))))
- (native-search-paths
- (list (search-path-specification
- (variable "COQPATH")
- (files (list "lib/coq/user-contrib")))))
- (build-system ocaml-build-system)
- (inputs
- `(("lablgtk" ,lablgtk)
- ("python" ,python-2)
- ("camlp5" ,camlp5)
- ("ocaml-num" ,ocaml-num)))
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'configure
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (mandir (string-append out "/share/man"))
- (browser "icecat -remote \"OpenURL(%s,new-tab)\""))
- (invoke "./configure"
- "-prefix" out
- "-mandir" mandir
- "-browser" browser
- "-coqide" "opt"))))
- (replace 'build
- (lambda _
- (invoke "make"
- "-j" (number->string (parallel-job-count))
- "world")))
- (delete 'check)
- (add-after 'install 'check
- (lambda _
- (with-directory-excursion "test-suite"
- ;; These two tests fail.
- ;; This one fails because the output is not formatted as expected.
- (delete-file-recursively "coq-makefile/timing")
- ;; This one fails because we didn't build coqtop.byte.
- (delete-file-recursively "coq-makefile/findlib-package")
- (invoke "make")))))))
- (home-page "https://coq.inria.fr")
- (synopsis "Proof assistant for higher-order logic")
- (description
- "Coq is a proof assistant for higher-order logic, which allows the
-development of computer programs consistent with their formal specification.
-It is developed using Objective Caml and Camlp5.")
- ;; The code is distributed under lgpl2.1.
- ;; Some of the documentation is distributed under opl1.0+.
- (license (list license:lgpl2.1 license:opl1.0+))))
-
-(define-public proof-general
- (package
- (name "proof-general")
- (version "4.2")
- (source (origin
- (method url-fetch)
- (uri (string-append
- "http://proofgeneral.inf.ed.ac.uk/releases/"
- "ProofGeneral-" version ".tgz"))
- (sha256
- (base32
- "09qb0myq66fw17v4ziz401ilsb5xlxz1nl2wsp69d0vrfy0bcrrm"))))
- (build-system gnu-build-system)
- (native-inputs
- `(("which" ,which)
- ("emacs" ,emacs-minimal)
- ("texinfo" ,texinfo)))
- (inputs
- `(("host-emacs" ,emacs)
- ("perl" ,perl)
- ("coq" ,coq)))
- (arguments
- `(#:tests? #f ; no check target
- #:make-flags (list (string-append "PREFIX=" %output)
- (string-append "DEST_PREFIX=" %output))
- #:modules ((guix build gnu-build-system)
- (guix build utils)
- (guix build emacs-utils))
- #:imported-modules (,@%gnu-build-system-modules
- (guix build emacs-utils))
- #:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (add-after 'unpack 'disable-byte-compile-error-on-warn
- (lambda _
- (substitute* "Makefile"
- (("\\(setq byte-compile-error-on-warn t\\)")
- "(setq byte-compile-error-on-warn nil)"))
- #t))
- (add-after 'unpack 'patch-hardcoded-paths
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out"))
- (coq (assoc-ref inputs "coq"))
- (emacs (assoc-ref inputs "host-emacs")))
- (define (coq-prog name)
- (string-append coq "/bin/" name))
- (emacs-substitute-variables "coq/coq.el"
- ("coq-prog-name" (coq-prog "coqtop"))
- ("coq-compiler" (coq-prog "coqc"))
- ("coq-dependency-analyzer" (coq-prog "coqdep")))
- (substitute* "Makefile"
- (("/sbin/install-info") "install-info"))
- (substitute* "bin/proofgeneral"
- (("^PGHOMEDEFAULT=.*" all)
- (string-append all
- "PGHOME=$PGHOMEDEFAULT\n"
- "EMACS=" emacs "/bin/emacs")))
- #t)))
- (add-after 'unpack 'clean
- (lambda _
- ;; Delete the pre-compiled elc files for Emacs 23.
- (zero? (system* "make" "clean"))))
- (add-after 'install 'install-doc
- (lambda* (#:key make-flags #:allow-other-keys)
- ;; XXX FIXME avoid building/installing pdf files,
- ;; due to unresolved errors building them.
- (substitute* "Makefile"
- ((" [^ ]*\\.pdf") ""))
- (zero? (apply system* "make" "install-doc"
- make-flags)))))))
- (home-page "http://proofgeneral.inf.ed.ac.uk/")
- (synopsis "Generic front-end for proof assistants based on Emacs")
- (description
- "Proof General is a major mode to turn Emacs into an interactive proof
-assistant to write formal mathematical proofs using a variety of theorem
-provers.")
- (license license:gpl2+)))
-
(define-public emacs-tuareg
(package
(name "emacs-tuareg")
@@ -4273,6 +4138,7 @@ and 4 (random based) according to RFC 4122.")
(setenv "CONFIG_SHELL" (string-append (assoc-ref inputs "bash")
"/bin/sh")))))))
(inputs `(("lablgtk" ,lablgtk)))
+ (properties `((upstream-name . "ocamlgraph")))
(home-page "http://ocamlgraph.lri.fr/")
(synopsis "Graph library for OCaml")
(description "OCamlgraph is a generic graph library for OCaml.")
@@ -4712,285 +4578,6 @@ OCaml projects that contain C stubs.")
cross-platform SDL C library.")
(license license:isc)))
-(define-public coq-flocq
- (package
- (name "coq-flocq")
- (version "2.6.1")
- (source (origin
- (method url-fetch)
- ;; Use the ‘Latest version’ link for a stable URI across releases.
- (uri (string-append "https://gforge.inria.fr/frs/download.php/"
- "file/37454/flocq-" version ".tar.gz"))
- (sha256
- (base32
- "06msp1fwpqv6p98a3i1nnkj7ch9rcq3rm916yxq8dxf51lkghrin"))))
- (build-system gnu-build-system)
- (native-inputs
- `(("ocaml" ,ocaml)
- ("which" ,which)
- ("coq" ,coq)))
- (arguments
- `(#:configure-flags
- (list (string-append "--libdir=" (assoc-ref %outputs "out")
- "/lib/coq/user-contrib/Flocq"))
- #:phases
- (modify-phases %standard-phases
- (add-before 'configure 'fix-remake
- (lambda _
- (substitute* "remake.cpp"
- (("/bin/sh") (which "sh")))
- #t))
- (replace 'build
- (lambda _
- (invoke "./remake")
- #t))
- (replace 'check
- (lambda _
- (invoke "./remake" "check")
- #t))
- ;; TODO: requires coq-gappa and coq-interval.
- ;(invoke "./remake" "check-more")
- (replace 'install
- (lambda _
- (invoke "./remake" "install")
- #t)))))
- (home-page "http://flocq.gforge.inria.fr/")
- (synopsis "Floating-point formalization for the Coq system")
- (description "Flocq (Floats for Coq) is a floating-point formalization for
-the Coq system. It provides a comprehensive library of theorems on a multi-radix
-multi-precision arithmetic. It also supports efficient numerical computations
-inside Coq.")
- (license license:lgpl3+)))
-
-(define-public coq-gappa
- (package
- (name "coq-gappa")
- (version "1.3.2")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://gforge.inria.fr/frs/download.php/file/36397/gappa-"
- version ".tar.gz"))
- (sha256
- (base32
- "19kg2zldaqs4smy7bv9hp650sqg46xbx1ss7jnyagpxdscwn9apd"))))
- (build-system gnu-build-system)
- (native-inputs
- `(("ocaml" ,ocaml)
- ("which" ,which)
- ("coq" ,coq)
- ("bison" ,bison)
- ("flex" ,flex)))
- (inputs
- `(("gmp" ,gmp)
- ("mpfr" ,mpfr)
- ("boost" ,boost)))
- (arguments
- `(#:configure-flags
- (list (string-append "--libdir=" (assoc-ref %outputs "out")
- "/lib/coq/user-contrib/Gappa"))
- #:phases
- (modify-phases %standard-phases
- (add-before 'configure 'fix-remake
- (lambda _
- (substitute* "remake.cpp"
- (("/bin/sh") (which "sh")))))
- (replace 'build
- (lambda _
- (zero? (system* "./remake"))))
- (replace 'check
- (lambda _
- (zero? (system* "./remake" "check"))))
- (replace 'install
- (lambda _
- (zero? (system* "./remake" "install")))))))
- (home-page "http://gappa.gforge.inria.fr/")
- (synopsis "Verify and formally prove properties on numerical programs")
- (description "Gappa is a tool intended to help verifying and formally proving
-properties on numerical programs dealing with floating-point or fixed-point
-arithmetic. It has been used to write robust floating-point filters for CGAL
-and it is used to certify elementary functions in CRlibm. While Gappa is
-intended to be used directly, it can also act as a backend prover for the Why3
-software verification plateform or as an automatic tactic for the Coq proof
-assistant.")
- (license (list license:gpl2+ license:cecill))));either gpl2+ or cecill
-
-(define-public coq-mathcomp
- (package
- (name "coq-mathcomp")
- (version "1.7.0")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/math-comp/math-comp/archive/mathcomp-"
- version ".tar.gz"))
- (sha256
- (base32
- "05zgyi4wmasi1rcyn5jq42w0bi9713q9m8dl1fdgl66nmacixh39"))))
- (build-system gnu-build-system)
- (native-inputs
- `(("ocaml" ,ocaml)
- ("which" ,which)
- ("coq" ,coq)))
- (arguments
- `(#:tests? #f; No need to test formally-verified programs :)
- #:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (add-before 'build 'chdir
- (lambda _
- (chdir "mathcomp")))
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (setenv "COQLIB" (string-append (assoc-ref outputs "out") "/lib/coq/"))
- (zero? (system* "make" "-f" "Makefile.coq"
- (string-append "COQLIB=" (assoc-ref outputs "out")
- "/lib/coq/")
- "install")))))))
- (home-page "https://math-comp.github.io/math-comp/")
- (synopsis "Mathematical Components for Coq")
- (description "Mathematical Components for Coq has its origins in the formal
-proof of the Four Colour Theorem. Since then it has grown to cover many areas
-of mathematics and has been used for large scale projects like the formal proof
-of the Odd Order Theorem.
-
-The library is written using the Ssreflect proof language that is an integral
-part of the distribution.")
- (license license:cecill-b)))
-
-(define-public coq-coquelicot
- (package
- (name "coq-coquelicot")
- (version "3.0.1")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://gforge.inria.fr/frs/download.php/"
- "file/37045/coquelicot-" version ".tar.gz"))
- (sha256
- (base32
- "0hsyhsy2lwqxxx2r8xgi5csmirss42lp9bkb9yy35mnya0w78c8r"))))
- (build-system gnu-build-system)
- (native-inputs
- `(("ocaml" ,ocaml)
- ("which" ,which)
- ("coq" ,coq)))
- (propagated-inputs
- `(("mathcomp" ,coq-mathcomp)))
- (arguments
- `(#:configure-flags
- (list (string-append "--libdir=" (assoc-ref %outputs "out")
- "/lib/coq/user-contrib/Coquelicot"))
- #:phases
- (modify-phases %standard-phases
- (add-before 'configure 'fix-coq8.8
- (lambda _
- ; appcontext has been removed from coq 8.8
- (substitute* "theories/AutoDerive.v"
- (("appcontext") "context"))
- #t))
- (add-before 'configure 'fix-remake
- (lambda _
- (substitute* "remake.cpp"
- (("/bin/sh") (which "sh")))))
- (replace 'build
- (lambda _
- (zero? (system* "./remake"))))
- (replace 'check
- (lambda _
- (zero? (system* "./remake" "check"))))
- (replace 'install
- (lambda _
- (zero? (system* "./remake" "install")))))))
- (home-page "http://coquelicot.saclay.inria.fr/index.html")
- (synopsis "Coq library for Reals")
- (description "Coquelicot is an easier way of writing formulas and theorem
-statements, achieved by relying on total functions in place of dependent types
-for limits, derivatives, integrals, power series, and so on. To help with the
-proof process, the library comes with a comprehensive set of theorems that cover
-not only these notions, but also some extensions such as parametric integrals,
-two-dimensional differentiability, asymptotic behaviors. It also offers some
-automations for performing differentiability proofs. Moreover, Coquelicot is a
-conservative extension of Coq's standard library and provides correspondence
-theorems between the two libraries.")
- (license license:lgpl3+)))
-
-(define-public coq-bignums
- (package
- (name "coq-bignums")
- (version "8.8.0")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/coq/bignums/archive/V"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "08m1cmq4hkaf4sb0vy978c11rgzvds71cphyadmr2iirpr5815r0"))))
- (build-system gnu-build-system)
- (native-inputs
- `(("ocaml" ,ocaml)
- ("coq" ,coq)))
- (inputs
- `(("camlp5" ,camlp5)))
- (arguments
- `(#:tests? #f; No test target
- #:make-flags
- (list (string-append "COQLIBINSTALL=" (assoc-ref %outputs "out")
- "/lib/coq/user-contrib"))
- #:phases
- (modify-phases %standard-phases
- (delete 'configure))))
- (home-page "https://github.com/coq/bignums")
- (synopsis "Coq library for arbitrary large numbers")
- (description "Bignums is a coq library of arbitrary large numbers. It
-provides BigN, BigZ, BigQ that used to be part of Coq standard library.")
- (license license:lgpl2.1+)))
-
-(define-public coq-interval
- (package
- (name "coq-interval")
- (version "3.3.0")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://gforge.inria.fr/frs/download.php/"
- "file/37077/interval-" version ".tar.gz"))
- (sha256
- (base32
- "08fdcf3hbwqphglvwprvqzgkg0qbimpyhnqsgv3gac4y1ap0f903"))))
- (build-system gnu-build-system)
- (native-inputs
- `(("ocaml" ,ocaml)
- ("which" ,which)
- ("coq" ,coq)))
- (propagated-inputs
- `(("flocq" ,coq-flocq)
- ("bignums" ,coq-bignums)
- ("coquelicot" ,coq-coquelicot)
- ("mathcomp" ,coq-mathcomp)))
- (arguments
- `(#:configure-flags
- (list (string-append "--libdir=" (assoc-ref %outputs "out")
- "/lib/coq/user-contrib/Gappa"))
- #:phases
- (modify-phases %standard-phases
- (add-before 'configure 'fix-remake
- (lambda _
- (substitute* "remake.cpp"
- (("/bin/sh") (which "sh")))))
- (replace 'build
- (lambda _
- (zero? (system* "./remake"))))
- (replace 'check
- (lambda _
- (zero? (system* "./remake" "check"))))
- (replace 'install
- (lambda _
- (zero? (system* "./remake" "install")))))))
- (home-page "http://coq-interval.gforge.inria.fr/")
- (synopsis "Coq tactics to simplify inequality proofs")
- (description "Interval provides vernacular files containing tactics for
-simplifying the proofs of inequalities on expressions of real numbers for the
-Coq proof assistant.")
- (license license:cecill-c)))
-
(define-public dedukti
(package
(name "dedukti")
@@ -5045,6 +4632,62 @@ rules. This system is not designed to develop proofs, but to check proofs
developed in other systems. In particular, it enjoys a minimalistic syntax.")
(license license:cecill-c)))
+(define-public emacs-dedukti-mode
+ (let ((commit "d7c3505a1046187de3c3aeb144455078d514594e"))
+ (package
+ (name "emacs-dedukti-mode")
+ (version (git-version "0" "0" commit))
+ (home-page "https://github.com/rafoo/dedukti-mode")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url home-page)
+ (commit commit)))
+ (sha256
+ (base32
+ "1842wikq24c8rg0ac84vb1qby9ng1nssxswyyni4kq85lng5lcrp"))
+ (file-name (git-file-name name version))))
+ (inputs
+ `(("dedukti" ,dedukti)))
+ (build-system emacs-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-before 'install 'patch-dkpath
+ (lambda _
+ (let ((dkcheck-path (which "dkcheck")))
+ (substitute* "dedukti-mode.el"
+ (("dedukti-path \"(.*)\"")
+ (string-append "dedukti-path \"" dkcheck-path "\"")))))))))
+ (synopsis "Emacs major mode for Dedukti files")
+ (description "This package provides an Emacs major mode for editing
+Dedukti files.")
+ (license license:cecill-b))))
+
+(define-public emacs-flycheck-dedukti
+ (let ((commit "3dbff5646355f39d57a3ec514f560a6b0082a1cd"))
+ (package
+ (name "emacs-flycheck-dedukti")
+ (version (git-version "0" "0" commit))
+ (home-page "https://github.com/rafoo/flycheck-dedukti")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url home-page)
+ (commit commit)))
+ (sha256
+ (base32
+ "1ffpxnwl3wx244n44mbw81g00nhnykd0lnid29f4aw1av7w6nw8l"))
+ (file-name (git-file-name name version))))
+ (build-system emacs-build-system)
+ (inputs
+ `(("dedukti-mode" ,emacs-dedukti-mode)
+ ("flycheck-mode" ,emacs-flycheck)))
+ (synopsis "Flycheck integration for the dedukti language")
+ (description "This package provides a frontend for Flycheck to perform
+syntax checking on dedukti files.")
+ (license license:cecill-b))))
+
(define-public ocaml-biniou
(package
(name "ocaml-biniou")
@@ -5105,3 +4748,88 @@ speedup, polymorphic variants and optional syntax for tuples and variants.
yojson package. The program @code{atdgen} can be used to derive OCaml-JSON
serializers and deserializers from type definitions.")
(license license:bsd-3)))
+
+(define-public ocaml-gsl
+ (package
+ (name "ocaml-gsl")
+ (version "1.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append
+ "https://github.com/mmottl/gsl-ocaml/releases/download/"
+ version "/gsl-" version ".tbz"))
+ (sha256
+ (base32
+ "17vcswipliq1b2idbzx1z95kskn1a4q4s5v04igilg0f7lnkaarb"))))
+ (build-system ocaml-build-system)
+ (inputs
+ `(("gsl" ,gsl)))
+ (home-page "https://mmottl.github.io/gsl-ocaml")
+ (synopsis "Bindings to the GNU Scientific Library")
+ (description
+ "GSL-OCaml is an interface to the @dfn{GNU scientific library} (GSL) for
+the OCaml language.")
+ (license license:gpl3+)))
+
+(define-public ocaml4.01-gsl
+ (package-with-ocaml4.01 ocaml-gsl))
+
+(define-public cubicle
+ (package
+ (name "cubicle")
+ (version "1.1.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "http://cubicle.lri.fr/cubicle-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "10kk80jdmpdvql88sdjsh7vqzlpaphd8vip2lp47aarxjkwjlz1q"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("automake" ,automake)
+ ("ocaml" ,ocaml)
+ ("which" ,(@@ (gnu packages base) which))))
+ (propagated-inputs
+ `(("ocaml-num" ,ocaml-num)
+ ("z3" ,z3)))
+ (arguments
+ `(#:configure-flags (list "--with-z3")
+ #:make-flags (list "QUIET=")
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'configure 'configure-for-release
+ (lambda _
+ (substitute* "Makefile.in"
+ (("SVNREV=") "#SVNREV="))
+ #t))
+ (add-before 'configure 'fix-/bin/sh
+ (lambda _
+ (substitute* "configure"
+ (("-/bin/sh") (string-append "-" (which "sh"))))
+ #t))
+ (add-before 'configure 'fix-smt-z3wrapper.ml
+ (lambda _
+ (substitute* "Makefile.in"
+ (("\\\\n") ""))
+ #t))
+ (add-before 'configure 'fix-ocaml-num
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "Makefile.in"
+ (("= \\$\\(FUNCTORYLIB\\)")
+ (string-append "= -I "
+ (assoc-ref inputs "ocaml-num")
+ "/lib/ocaml/site-lib"
+ " $(FUNCTORYLIB)")))
+ #t)))))
+ (home-page "http://cubicle.lri.fr/")
+ (synopsis "Model checker for array-based systems")
+ (description "Cubicle is a model checker for verifying safety properties
+of array-based systems. This is a syntactically restricted class of
+parametrized transition systems with states represented as arrays indexed by
+an arbitrary number of processes. Cache coherence protocols and mutual
+exclusion algorithms are typical examples of such systems.")
+ (license license:asl2.0)))