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authorBen Woodcroft <donttrustben@gmail.com>2016-07-12 15:56:07 +1000
committerBen Woodcroft <donttrustben@gmail.com>2016-08-08 22:08:17 +1000
commit791c11d6a0214afd03ead2aab25a8852f4305405 (patch)
treea9d9cf393e0248858e8fe9bdd93409fe3a061bcc /gnu/packages/machine-learning.scm
parentf5594729395becfcac2a48abc4448c40fc519a4e (diff)
downloadpatches-791c11d6a0214afd03ead2aab25a8852f4305405.tar
patches-791c11d6a0214afd03ead2aab25a8852f4305405.tar.gz
gnu: Add mcl.
* gnu/packages/machine-learning.scm (mcl): New variable.
Diffstat (limited to 'gnu/packages/machine-learning.scm')
-rw-r--r--gnu/packages/machine-learning.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 2ccf0f2557..f96672cfb2 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -33,6 +33,7 @@
#:use-module (gnu packages dejagnu)
#:use-module (gnu packages gcc)
#:use-module (gnu packages maths)
+ #:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages statistics)
@@ -200,6 +201,36 @@ Markov Models} (HMM) and algorithms: discrete, continous emissions, basic
training, HMM clustering, HMM mixtures.")
(license license:lgpl2.0+))))
+(define-public mcl
+ (package
+ (name "mcl")
+ (version "14.137")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://micans.org/mcl/src/mcl-"
+ (string-replace-substring version "." "-")
+ ".tar.gz"))
+ (sha256
+ (base32
+ "15xlax3z31lsn62vlg94hkm75nm40q4679amnfg13jm8m2bnhy5m"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:configure-flags (list "--enable-blast")))
+ (inputs
+ `(("perl" ,perl)))
+ (home-page "http://micans.org/mcl/")
+ (synopsis "Clustering algorithm for graphs")
+ (description
+ "The MCL algorithm is short for the @dfn{Markov Cluster Algorithm}, a
+fast and scalable unsupervised cluster algorithm for graphs (also known as
+networks) based on simulation of (stochastic) flow in graphs.")
+ ;; In the LICENCE file and web page it says "The software is licensed
+ ;; under the GNU General Public License, version 3.", but in several of
+ ;; the source code files it suggests GPL3 or later.
+ ;; http://listserver.ebi.ac.uk/pipermail/mcl-users/2016/000376.html
+ (license license:gpl3)))
+
(define-public randomjungle
(package
(name "randomjungle")