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| author | Efraim Flashner <efraim@flashner.co.il> | 2019-11-25 10:55:01 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2019-11-25 14:08:32 +0200 |
| commit | 3546771cc8e5a24de89965e69f74c1d20027fefd (patch) | |
| tree | ca10b243ce5637a31841e16fc34bae6d46a67c8f /gnu/packages/datastructures.scm | |
| parent | 31872b3e75da777c3f02b7544808d30849a56d7b (diff) | |
| download | patches-3546771cc8e5a24de89965e69f74c1d20027fefd.tar patches-3546771cc8e5a24de89965e69f74c1d20027fefd.tar.gz | |
gnu: libdivsufsort: Move to datastructures.scm.
* gnu/packages/bioinformatics.scm (libdivsufsort): Move to ...
* gnu/packages/datastructures.scm: ... here.
Diffstat (limited to 'gnu/packages/datastructures.scm')
| -rw-r--r-- | gnu/packages/datastructures.scm | 31 |
1 files changed, 30 insertions, 1 deletions
diff --git a/gnu/packages/datastructures.scm b/gnu/packages/datastructures.scm index 7eab65fd5f..3ead3ac2c4 100644 --- a/gnu/packages/datastructures.scm +++ b/gnu/packages/datastructures.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2019 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2017, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com> ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il> @@ -229,3 +229,32 @@ operations of the original object efficiently. The theoretical time complexity of an operation performed on the classical data structure and the equivalent succinct data structure are (most of the time) identical.") (license license:gpl3+))) + +(define-public libdivsufsort + (package + (name "libdivsufsort") + (version "2.0.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/y-256/libdivsufsort.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2")))) + (build-system cmake-build-system) + (arguments + '(#:tests? #f ; there are no tests + #:configure-flags + ;; Needed for rapmap and sailfish. + '("-DBUILD_DIVSUFSORT64=ON"))) + (home-page "https://github.com/y-256/libdivsufsort") + (synopsis "Lightweight suffix-sorting library") + (description "libdivsufsort is a software library that implements a +lightweight suffix array construction algorithm. This library provides a +simple and an efficient C API to construct a suffix array and a +Burrows-Wheeler transformed string from a given string over a constant-size +alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1) +bytes of memory space, where n is the length of the string.") + (license license:expat))) |