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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-09-05 16:00:03 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-09-10 16:50:26 +0200 |
| commit | 80f4db91b17ff5d82260c9194ec09a408f854455 (patch) | |
| tree | f39fa3c0658b5c4e4244f1011545ddff92dc81a6 /gnu/packages/bioinformatics.scm | |
| parent | 1f41f01c1499fb0aa5933b9b60d2a18c2bef9d5c (diff) | |
| download | patches-80f4db91b17ff5d82260c9194ec09a408f854455.tar patches-80f4db91b17ff5d82260c9194ec09a408f854455.tar.gz | |
gnu: Add python-pyfaidx.
* gnu/packages/bioinformatics.scm (python-pyfaidx): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9b047c21b8..d66d9ef40e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13556,3 +13556,25 @@ bound.") "Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line.") (license license:expat))) + +(define-public python-pyfaidx + (package + (name "python-pyfaidx") + (version "0.5.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyfaidx" version)) + (sha256 + (base32 + "0y5zyjksj1rdglj601xd2bbni5abhdh622y3ck76chyzxz9z4rx8")))) + (build-system python-build-system) + (propagated-inputs + `(("python-setuptools" ,python-setuptools) + ("python-six" ,python-six))) + (home-page "http://mattshirley.com") + (synopsis "Random access to fasta subsequences") + (description + "This package provides procedures for efficient pythonic random access to +fasta subsequences.") + (license license:bsd-3))) |