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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-03-27 10:09:10 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-04-01 11:39:39 +0200 |
| commit | bfe3c6857251c1fff24317da602b9cd762c1c112 (patch) | |
| tree | 696aa112d45a141745eccbd126198fcf4458f9d8 /gnu/packages/bioinformatics.scm | |
| parent | 9495e73689b4d650146523830ee2da164fc50448 (diff) | |
| download | patches-bfe3c6857251c1fff24317da602b9cd762c1c112.tar patches-bfe3c6857251c1fff24317da602b9cd762c1c112.tar.gz | |
gnu: Add clustal omega.
* gnu/packages/bioinformatics.scm (clustal-omega): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3725f3ffe5..9813d07e9c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -33,6 +33,7 @@ #:use-module (gnu packages ncurses) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages popt) #:use-module (gnu packages python) #:use-module (gnu packages tbb) #:use-module (gnu packages vim) @@ -360,6 +361,30 @@ multiple sequence alignments.") "CLIPper is a tool to define peaks in CLIP-seq datasets.") (license license:gpl2))) +(define-public clustal-omega + (package + (name "clustal-omega") + (version "1.2.1") + (source (origin + (method url-fetch) + (uri (string-append + "http://www.clustal.org/omega/clustal-omega-" + version ".tar.gz")) + (sha256 + (base32 + "02ibkx0m0iwz8nscg998bh41gg251y56cgh86bvyrii5m8kjgwqf")))) + (build-system gnu-build-system) + (inputs + `(("argtable" ,argtable))) + (home-page "http://www.clustal.org/omega/") + (synopsis "Multiple sequence aligner for protein and DNA/RNA") + (description + "Clustal-Omega is a general purpose multiple sequence alignment (MSA) +program for protein and DNA/RNA. It produces high quality MSAs and is capable +of handling data-sets of hundreds of thousands of sequences in reasonable +time.") + (license license:gpl2+))) + (define-public crossmap (package (name "crossmap") |