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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-09-21 22:45:40 +0200
committerRicardo Wurmus <rekado@elephly.net>2016-09-26 07:47:55 +0200
commit684f29bd2e7ae7d51be4b873a01bf0836c3fa64b (patch)
treeb3cfd61e898388a72dec7c0d0a7fab06f0a42c47 /gnu/packages/bioinformatics.scm
parent7f903d7300059a34f2bbb11dc2c07ee1d0b59c0b (diff)
downloadpatches-684f29bd2e7ae7d51be4b873a01bf0836c3fa64b.tar
patches-684f29bd2e7ae7d51be4b873a01bf0836c3fa64b.tar.gz
gnu: Add r-grohmm.
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fdd71137cd..3837879626 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5396,6 +5396,32 @@ experimental designs is facilitated by a consistently implemented sample
annotation infrastructure.")
(license license:artistic2.0)))
+(define-public r-grohmm
+ (package
+ (name "r-grohmm")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "groHMM" version))
+ (sha256
+ (base32
+ "1l9mcyzyc548114ysb9r0q7hgzw3yy7gpiahrzkzj6hblc4f1jyp"))))
+ (properties `((upstream-name . "groHMM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://github.com/Kraus-Lab/groHMM")
+ (synopsis "GRO-seq analysis pipeline")
+ (description
+ "This package provides a pipeline for the analysis of GRO-seq data.")
+ (license license:gpl3+)))
+
(define-public vsearch
(package
(name "vsearch")