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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-09-21 22:45:40 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-09-26 07:47:55 +0200 |
| commit | 684f29bd2e7ae7d51be4b873a01bf0836c3fa64b (patch) | |
| tree | b3cfd61e898388a72dec7c0d0a7fab06f0a42c47 /gnu/packages/bioinformatics.scm | |
| parent | 7f903d7300059a34f2bbb11dc2c07ee1d0b59c0b (diff) | |
| download | patches-684f29bd2e7ae7d51be4b873a01bf0836c3fa64b.tar patches-684f29bd2e7ae7d51be4b873a01bf0836c3fa64b.tar.gz | |
gnu: Add r-grohmm.
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fdd71137cd..3837879626 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5396,6 +5396,32 @@ experimental designs is facilitated by a consistently implemented sample annotation infrastructure.") (license license:artistic2.0))) +(define-public r-grohmm + (package + (name "r-grohmm") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "groHMM" version)) + (sha256 + (base32 + "1l9mcyzyc548114ysb9r0q7hgzw3yy7gpiahrzkzj6hblc4f1jyp")))) + (properties `((upstream-name . "groHMM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://github.com/Kraus-Lab/groHMM") + (synopsis "GRO-seq analysis pipeline") + (description + "This package provides a pipeline for the analysis of GRO-seq data.") + (license license:gpl3+))) + (define-public vsearch (package (name "vsearch") |