aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-09-21 22:45:23 +0200
committerRicardo Wurmus <rekado@elephly.net>2016-09-26 03:21:19 +0200
commit2301fd3e4d3d1789f63e19d9f46146e157d7e610 (patch)
tree910764441d0c197ec181db38755852477165a1e6 /gnu/packages/bioinformatics.scm
parent2d21d44dbdf871e95bb416026d9075da93e460ec (diff)
downloadpatches-2301fd3e4d3d1789f63e19d9f46146e157d7e610.tar
patches-2301fd3e4d3d1789f63e19d9f46146e157d7e610.tar.gz
gnu: Add r-genefilter.
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8ed35a8fa3..f11a89ec45 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5099,6 +5099,32 @@ microarrays.")
"This package provides functions for plotting genomic data.")
(license license:artistic2.0)))
+(define-public r-genefilter
+ (package
+ (name "r-genefilter")
+ (version "1.54.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "genefilter" version))
+ (sha256
+ (base32
+ "1hmz6as0njvrsrdbgmk72jyclnnqvfdvp6kqv456h43ldq2ajfv5"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (propagated-inputs
+ `(("r-annotate" ,r-annotate)
+ ("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "http://bioconductor.org/packages/genefilter")
+ (synopsis "Filter genes from high-throughput experiments")
+ (description
+ "This package provides basic functions for filtering genes from
+high-throughput sequencing experiments.")
+ (license license:artistic2.0)))
+
(define-public vsearch
(package
(name "vsearch")