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| author | Roel Janssen <roel@gnu.org> | 2016-03-30 15:03:56 +0200 |
|---|---|---|
| committer | Leo Famulari <leo@famulari.name> | 2016-04-06 17:38:42 -0400 |
| commit | b669d9c4c8ee4158f6122e29d807e0f9b2cd73c5 (patch) | |
| tree | 8be1b18261d27d2fedd22a9452a4ce736e91dde8 /gnu/packages/bioinformatics.scm | |
| parent | a7681d29dcb415593a06cf265aabc776bd3a02c0 (diff) | |
| download | patches-b669d9c4c8ee4158f6122e29d807e0f9b2cd73c5.tar patches-b669d9c4c8ee4158f6122e29d807e0f9b2cd73c5.tar.gz | |
gnu: Add r-variantannotation.
* gnu/packages/bioinformatics.scm (r-variantannotation): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0afc0a6979..a2cd29b3e7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4036,6 +4036,38 @@ translation between different chromosome sequence naming conventions (e.g., names in their natural, rather than lexicographic, order.") (license license:artistic2.0))) +(define-public r-variantannotation + (package + (name "r-variantannotation") + (version "1.16.4") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "VariantAnnotation" version)) + (sha256 + (base32 + "1z42j3p9b8h725inq8n0230llsdbav3gwcxy1nliypzfkxbzahsb")))) + (properties + `((upstream-name . "VariantAnnotation"))) + (inputs + `(("zlib" ,zlib))) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biocgenerics" ,r-biocgenerics) + ("r-bsgenome" ,r-bsgenome) + ("r-dbi" ,r-dbi) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-rsamtools" ,r-rsamtools) + ("r-zlibbioc" ,r-zlibbioc))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/VariantAnnotation") + (synopsis "Package for annotation of genetic variants") + (description "This R package can annotate variants, compute amino acid +coding changes and predict coding outcomes.") + (license license:artistic2.0))) + (define-public r-xvector (package (name "r-xvector") |