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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-04-17 15:49:19 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-04-17 15:53:03 +0200 |
| commit | c55beaecd8c5a36052b628cbd429da9ab7803c8d (patch) | |
| tree | 64d14cf0a40ed0940f5157c1a69d795d15f5b931 /gnu/packages/bioinformatics.scm | |
| parent | 4a085ffc16b25d14d9188d9e2e88baa27f5c7f12 (diff) | |
| download | patches-c55beaecd8c5a36052b628cbd429da9ab7803c8d.tar patches-c55beaecd8c5a36052b628cbd429da9ab7803c8d.tar.gz | |
gnu: python-cooler: Update to 0.8.7.
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7.
[propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and
python-simplejson.
[native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add
python-pytest.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 9 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 73a1fe119b..6fcabb6f9e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13641,32 +13641,34 @@ fasta subsequences.") (define-public python-cooler (package (name "python-cooler") - (version "0.7.11") + (version "0.8.7") (source (origin (method url-fetch) (uri (pypi-uri "cooler" version)) (sha256 (base32 - "08k5nxnxa6qsbk15z5z0q01n28042k87wi4905hh95rzqib15mhx")))) + "01g6gqix9ba27sappz6nfyiwabzrlf8i5fn8kwcz8ra356cq9crp")))) (build-system python-build-system) (propagated-inputs - `(("python-biopython" ,python-biopython) + `(("python-asciitree" ,python-asciitree) + ("python-biopython" ,python-biopython) ("python-click" ,python-click) ("python-cytoolz" ,python-cytoolz) ("python-dask" ,python-dask) ("python-h5py" ,python-h5py) ("python-multiprocess" ,python-multiprocess) + ("python-numpy" ,python-numpy) ("python-pandas" ,python-pandas) ("python-pyfaidx" ,python-pyfaidx) ("python-pypairix" ,python-pypairix) ("python-pysam" ,python-pysam) - ("python-scipy" ,python-scipy))) + ("python-pyyaml" ,python-pyyaml) + ("python-scipy" ,python-scipy) + ("python-simplejson" ,python-simplejson))) (native-inputs `(("python-mock" ,python-mock) - ("python-nose" ,python-nose) - ("python-numpydoc" ,python-numpydoc) - ("python-sphinx" ,python-sphinx))) + ("python-pytest" ,python-pytest))) (home-page "https://github.com/mirnylab/cooler") (synopsis "Sparse binary format for genomic interaction matrices") (description |