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| author | Ricardo Wurmus <rekado@elephly.net> | 2016-01-16 15:48:51 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-01-16 15:50:51 +0100 |
| commit | 2309ed6862c51a4dad7aa1d37e34dcfce125e56b (patch) | |
| tree | ca1d0c0043d6c44e278a64f1786b9c549dc5ecdf /gnu/packages/bioinformatics.scm | |
| parent | e90cf6c14a32472f013959f0b79b80888e6fa35c (diff) | |
| download | patches-2309ed6862c51a4dad7aa1d37e34dcfce125e56b.tar patches-2309ed6862c51a4dad7aa1d37e34dcfce125e56b.tar.gz | |
gnu: samtools-0.1: Adapt to changes in "samtools" variable.
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Add
"LIBCURSES" make flag; delete "configure" phase; disable tests outside
of "substitute-keyword-arguments".
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 27 |
1 files changed, 15 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3cabb9f528..314d0ad322 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2456,18 +2456,21 @@ viewer.") (sha256 (base32 "1m33xsfwz0s8qi45lylagfllqg7fphf4dr0780rsvw75av9wk06h")))) (arguments - (substitute-keyword-arguments (package-arguments samtools) - ((#:tests? tests) #f) ;no "check" target - ((#:phases phases) - `(modify-phases ,phases - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append - (assoc-ref outputs "out") "/bin"))) - (mkdir-p bin) - (copy-file "samtools" - (string-append bin "/samtools"))))) - (delete 'patch-tests))))))) + `(#:tests? #f ;no "check" target + ,@(substitute-keyword-arguments (package-arguments samtools) + ((#:make-flags flags) + `(cons "LIBCURSES=-lncurses" ,flags)) + ((#:phases phases) + `(modify-phases ,phases + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append + (assoc-ref outputs "out") "/bin"))) + (mkdir-p bin) + (copy-file "samtools" + (string-append bin "/samtools"))))) + (delete 'patch-tests) + (delete 'configure)))))))) (define-public mosaik (let ((commit "5c25216d")) |