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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2018-02-14 14:27:43 +0100
committerRicardo Wurmus <rekado@elephly.net>2018-02-15 17:18:52 +0100
commit05f7296012b8a4bd6429abcaf6ff5000033a44c1 (patch)
tree16eb5934a878b5d96519e0f887859175caef608f /gnu/packages/bioinformatics.scm
parentfc162dbaec1348d42361e0f12fc0ea731d53141b (diff)
downloadpatches-05f7296012b8a4bd6429abcaf6ff5000033a44c1.tar
patches-05f7296012b8a4bd6429abcaf6ff5000033a44c1.tar.gz
gnu: Add r-delayedmatrixstats.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 41b7446915..548b045599 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10626,6 +10626,38 @@ cell-specific biases, assignment of cell cycle phase, and detection of highly
variable and significantly correlated genes.")
(license license:gpl3)))
+(define-public r-delayedmatrixstats
+ (package
+ (name "r-delayedmatrixstats")
+ (version "1.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DelayedMatrixStats" version))
+ (sha256
+ (base32
+ "1nfdan0k2z4mynxyblsil0cjclsy63b0w9r1hczfk27i8hmxx13h"))))
+ (properties
+ `((upstream-name . "DelayedMatrixStats")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-delayedarray" ,r-delayedarray)
+ ("r-iranges" ,r-iranges)
+ ("r-matrix" ,r-matrix)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://github.com/PeteHaitch/DelayedMatrixStats")
+ (synopsis "Functions that apply to rows and columns of DelayedMatrix objects")
+ (description
+ "This package provides a port of the @code{matrixStats} API for use with
+@code{DelayedMatrix} objects from the @code{DelayedArray} package. It
+contains high-performing functions operating on rows and columns of
+@code{DelayedMatrix} objects, e.g. @code{colMedians}, @code{rowMedians},
+@code{colRanks}, @code{rowRanks}, @code{colSds}, and @code{rowSds}. Functions
+are optimized per data type and for subsetted calculations such that both
+memory usage and processing time is minimized.")
+ (license license:expat)))
+
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package