diff options
| author | Pjotr Prins <pjotr.public12@thebird.nl> | 2015-09-28 12:19:21 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-09-28 12:22:47 +0200 |
| commit | b2bddb07ef16b10c926a598fcaf10d760d56c409 (patch) | |
| tree | 10af674c758451f70fb66293f327d1d0b41484c7 /gnu/packages/bioinformatics.scm | |
| parent | 0e4e03f884fb915784569f4fbf11ae74287d7f8c (diff) | |
| download | patches-b2bddb07ef16b10c926a598fcaf10d760d56c409.tar patches-b2bddb07ef16b10c926a598fcaf10d760d56c409.tar.gz | |
gnu: Add bio-blastxmlparser.
* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8fc6142f19..2d81f90a01 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2733,6 +2733,30 @@ chr+pos+alt information in a database.") (home-page "https://github.com/pjotrp/bio-locus") (license license:expat))) +(define-public bio-blastxmlparser + (package + (name "bio-blastxmlparser") + (version "2.0.4") + (source (origin + (method url-fetch) + (uri (rubygems-uri "bio-blastxmlparser" version)) + (sha256 + (base32 + "1wf4qygcmdjgcqm6flmvsagfr1gs9lf63mj32qv3z1f481zc5692")))) + (build-system ruby-build-system) + (propagated-inputs + `(("ruby-bio-logger" ,ruby-bio-logger) + ("ruby-nokogiri" ,ruby-nokogiri))) + (inputs + `(("ruby-rspec" ,ruby-rspec))) + (synopsis "Fast big data BLAST XML parser and library") + (description + "Very fast parallel big-data BLAST XML file parser which can be used as +command line utility. Use blastxmlparser to: Parse BLAST XML; filter output; +generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV, tabular output etc.") + (home-page "http://github.com/pjotrp/blastxmlparser") + (license license:expat))) + (define-public bioruby (package (name "bioruby") |