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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-02-06 21:24:42 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-02-06 21:32:16 +0100 |
| commit | 6df215f8c8ad0ed4afd8c32a0414cf2ac7ec8983 (patch) | |
| tree | d95ae91b1719472e639f1ecfab5457aae8d2a882 /gnu/packages/bioinformatics.scm | |
| parent | d11840b43ed2e0174b6012f1aeefb4c910c8c6c4 (diff) | |
| download | patches-6df215f8c8ad0ed4afd8c32a0414cf2ac7ec8983.tar patches-6df215f8c8ad0ed4afd8c32a0414cf2ac7ec8983.tar.gz | |
gnu: star: Update to 2.7.0b.
* gnu/packages/bioinformatics.scm (star): Update to 2.7.0b.
[arguments]: Add "add-missing-header" build phase.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 11 |
1 files changed, 9 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 23eba74175..516a7c1ee1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6020,7 +6020,7 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.") (define-public star (package (name "star") - (version "2.7.0a") + (version "2.7.0b") (source (origin (method git-fetch) (uri (git-reference @@ -6029,7 +6029,7 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1yx28gra6gqdx1ps5y8mpdinsn8r0dhsc2m3gcvjfrk71i9yhd6l")) + "1lih6cbpvnvhyvvswdhy06mwyzvwax96m723378v4z6psqzsh11d")) (modules '((guix build utils))) (snippet '(begin @@ -6055,6 +6055,13 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.") (("(COMPILATION_TIME_PLACE=\")(.*)(\")" _ pre mid post) (string-append pre "Built with Guix" post))) #t)) + ;; See https://github.com/alexdobin/STAR/pull/562 + (add-after 'enter-source-dir 'add-missing-header + (lambda _ + (substitute* "SoloReadFeature_inputRecords.cpp" + (("#include \"binarySearch2.h\"" h) + (string-append h "\n#include <math.h>"))) + #t)) (add-after 'enter-source-dir 'do-not-use-bundled-htslib (lambda _ (substitute* "Makefile" |