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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-09-05 16:07:28 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-09-10 16:50:26 +0200 |
| commit | 5bfa7510d144c3a35bc9022d79fdf4192d4aa1f8 (patch) | |
| tree | 4e965a071fcb3a53c5fe02801578e9dd33981497 /gnu/packages/bioinformatics.scm | |
| parent | 1189c7f1b050aa495b0ec6d9436c644ee308695f (diff) | |
| download | patches-5bfa7510d144c3a35bc9022d79fdf4192d4aa1f8.tar patches-5bfa7510d144c3a35bc9022d79fdf4192d4aa1f8.tar.gz | |
gnu: Add python-pygenometracks.
* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7e6d76e022..fc8be4d7db 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13668,3 +13668,34 @@ the visualization of multiple contact matrices along with other types of data like genes, compartments, ChIP-seq coverage tracks (and in general any type of genomic scores), long range contacts and the visualization of viewpoints.") (license license:gpl3))) + +(define-public python-pygenometracks + (package + (name "python-pygenometracks") + (version "2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyGenomeTracks" version)) + (sha256 + (base32 + "1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5")))) + (build-system python-build-system) + (propagated-inputs + `(("python-configparser" ,python-configparser) + ("python-future" ,python-future) + ("python-hicexplorer" ,python-hicexplorer) + ("python-intervaltree" ,python-intervaltree) + ("python-matplotlib" ,python-matplotlib) + ("python-numpy" ,python-numpy) + ("python-pybigwig" ,python-pybigwig))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://pygenometracks.readthedocs.io") + (synopsis "Program and library to plot beautiful genome browser tracks") + (description + "This package aims to produce high-quality genome browser tracks that +are highly customizable. Currently, it is possible to plot: bigwig, bed (many +options), bedgraph, links (represented as arcs), and Hi-C matrices. +pyGenomeTracks can make plots with or without Hi-C data.") + (license license:gpl3+))) |