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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-09-14 09:15:16 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-09-14 09:15:49 +0200 |
| commit | 1dd153b3aabcc05e2ed3863ea0571985c0cae307 (patch) | |
| tree | 63530061524741aacc6c9ed5982730d06e5f1b2b /gnu/packages/bioinformatics.scm | |
| parent | 6ffffb3c96779cdbec692e3d8e20281f258d660f (diff) | |
| download | patches-1dd153b3aabcc05e2ed3863ea0571985c0cae307.tar patches-1dd153b3aabcc05e2ed3863ea0571985c0cae307.tar.gz | |
gnu: Add python-hic2cool.
* gnu/packages/bioinformatics.scm (python-hic2cool): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f6410c3ca4..67f24a6170 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13699,3 +13699,27 @@ are highly customizable. Currently, it is possible to plot: bigwig, bed (many options), bedgraph, links (represented as arcs), and Hi-C matrices. pyGenomeTracks can make plots with or without Hi-C data.") (license license:gpl3+))) + +(define-public python-hic2cool + (package + (name "python-hic2cool") + (version "0.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "hic2cool" version)) + (sha256 + (base32 + "0xy6mhfns2lzib1kcr6419jjp6pmh0qx8z8na55lmiwn0ds8q9cl")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; no tests included + (propagated-inputs + `(("python-cooler" ,python-cooler))) + (home-page "https://github.com/4dn-dcic/hic2cool") + (synopsis "Converter for .hic and .cool files") + (description + "This package provides a converter between @code{.hic} files (from +juicer) and single-resolution or multi-resolution @code{.cool} files (for +cooler). Both @code{hic} and @code{cool} files describe Hi-C contact +matrices.") + (license license:expat))) |