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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-11-06 22:39:05 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 08:15:44 +0100 |
| commit | 15ca1959793b5ed9ae8fb525493edf9bd3caf2b8 (patch) | |
| tree | 7dbe401f1f8f430fc5e694137eb6b9e9f2b0ff27 /gnu/packages/bioinformatics.scm | |
| parent | 34b9675449fb5f2e027c91e4d322f4e74bf1e1e1 (diff) | |
| download | patches-15ca1959793b5ed9ae8fb525493edf9bd3caf2b8.tar patches-15ca1959793b5ed9ae8fb525493edf9bd3caf2b8.tar.gz | |
gnu: r-mzr: Remove bundled copy of boost.
* gnu/packages/bioinformatics.scm (r-mzr)[source]: Remove boost source.
[arguments]: Add build phase "use-system-boost" to link with our boost
package and avoid building the bundled sources.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 19 |
1 files changed, 18 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2ad5f953e1..115af50eb4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8899,9 +8899,26 @@ proteomics packages.") (uri (bioconductor-uri "mzR" version)) (sha256 (base32 - "1x3gp30sfxz2v3k3swih9kff9b2rvk7hzhnlkp6ywlnn2wgb0q8c")))) + "1x3gp30sfxz2v3k3swih9kff9b2rvk7hzhnlkp6ywlnn2wgb0q8c")) + (modules '((guix build utils))) + (snippet + '(begin + (delete-file-recursively "src/boost") + #t)))) (properties `((upstream-name . "mzR"))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'use-system-boost + (lambda _ + (substitute* "src/Makevars" + (("\\./boost/libs.*") "") + (("ARCH_OBJS=" line) + (string-append line + "\nARCH_LIBS=-lboost_system -lboost_regex \ +-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n"))) + #t))))) (inputs `(("boost" ,boost) ; use this instead of the bundled boost sources ("netcdf" ,netcdf))) |