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| author | Ben Woodcroft <donttrustben@gmail.com> | 2016-07-12 16:27:49 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-08-08 22:08:17 +1000 |
| commit | b16728b068ff9fda98b6f867a106a02bf5550364 (patch) | |
| tree | fedc214a0ed3b4b506fe415fbce812a64248cc51 /gnu/packages/bioinformatics.scm | |
| parent | db7a344427637795b08728f4d5cdd6857682826d (diff) | |
| download | patches-b16728b068ff9fda98b6f867a106a02bf5550364.tar patches-b16728b068ff9fda98b6f867a106a02bf5550364.tar.gz | |
gnu: Add exonerate.
* gnu/packages/bioinformatics.scm (exonerate): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4450580199..661bacb203 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -52,6 +52,7 @@ #:use-module (gnu packages gcc) #:use-module (gnu packages gd) #:use-module (gnu packages gtk) + #:use-module (gnu packages glib) #:use-module (gnu packages groff) #:use-module (gnu packages image) #:use-module (gnu packages imagemagick) @@ -1996,6 +1997,36 @@ in structured XML format. This can eliminate the need for writing custom software to answer ad hoc questions.") (license license:public-domain))) +(define-public exonerate + (package + (name "exonerate") + (version "2.4.0") + (source + (origin + (method url-fetch) + (uri + (string-append + "http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/" + "exonerate-" version ".tar.gz")) + (sha256 + (base32 + "0hj0m9xygiqsdxvbg79wq579kbrx1mdrabi2bzqz2zn9qwfjcjgq")))) + (build-system gnu-build-system) + (arguments + `(#:parallel-build? #f)) ; Building in parallel fails on some machines. + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("glib" ,glib))) + (home-page + "https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate") + (synopsis "Generic tool for biological sequence alignment") + (description + "Exonerate is a generic tool for pairwise sequence comparison. It allows +the alignment of sequences using a many alignment models, either exhaustive +dynamic programming or a variety of heuristics.") + (license license:gpl3))) + (define-public express (package (name "express") |