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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-03-30 10:22:21 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-03-30 10:35:53 +0200 |
| commit | 0d2c0562b86c70e409df53b6013d2835781a673b (patch) | |
| tree | 77f4f2d32e55a256e3d86c8ecc8ec7bfe2d6679c /gnu/packages/bioinformatics.scm | |
| parent | c3913fac57c557ba5ebc98c646f75c7000ab8aa7 (diff) | |
| download | patches-0d2c0562b86c70e409df53b6013d2835781a673b.tar patches-0d2c0562b86c70e409df53b6013d2835781a673b.tar.gz | |
gnu: stringtie: Remove typedef conflict.
* gnu/packages/bioinformatics.scm (stringtie)[arguments]: Remove conflicting
typedef in a new build phase "remove-duplicate-typedef".
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 232c7db838..1bba270749 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5210,6 +5210,13 @@ against local background noises.") (("#include \"(bam|sam|kstring).h\"" _ header) (string-append "#include <samtools/" header ".h>"))) #t)) + (add-after 'unpack 'remove-duplicate-typedef + (lambda _ + ;; This typedef conflicts with the typedef in + ;; glibc-2.25/include/bits/types.h + (substitute* "gclib/GThreads.h" + (("typedef long long __intmax_t;") "")) + #t)) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) |