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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-05-05 23:51:59 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-05-06 00:14:44 +0200 |
| commit | 3addf736d5b140c8c4b2303e63cd6375dd8b9720 (patch) | |
| tree | d0eace2f8b248f8c0431673f15277a33526612f7 /gnu/packages/bioinformatics.scm | |
| parent | 9bcbca135b0b6bb65abbd0b2abf1dbdffba67323 (diff) | |
| download | patches-3addf736d5b140c8c4b2303e63cd6375dd8b9720.tar patches-3addf736d5b140c8c4b2303e63cd6375dd8b9720.tar.gz | |
gnu: r-systempiper: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.0.
[propagated-inputs]: Replace r-batchjobs with r-batchtools; add r-yaml.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f6564e7e06..c38481d06f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6944,19 +6944,19 @@ ungapped alignment formats.") (define-public r-systempiper (package (name "r-systempiper") - (version "1.16.1") + (version "1.18.0") (source (origin (method url-fetch) (uri (bioconductor-uri "systemPipeR" version)) (sha256 (base32 - "0qzydz87rld2nhwzbfgrw5jfgh8maa9y54mjx9c4285m11qj2shq")))) + "1063vdf4g2i5xyabwvzkqfxd2j8s4zs6z4zxf8lx2ccjddhkn37a")))) (properties `((upstream-name . "systemPipeR"))) (build-system r-build-system) (propagated-inputs `(("r-annotate" ,r-annotate) - ("r-batchjobs" ,r-batchjobs) + ("r-batchtools" ,r-batchtools) ("r-biocgenerics" ,r-biocgenerics) ("r-biostrings" ,r-biostrings) ("r-deseq2" ,r-deseq2) @@ -6972,6 +6972,7 @@ ungapped alignment formats.") ("r-rsamtools" ,r-rsamtools) ("r-shortread" ,r-shortread) ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-yaml" ,r-yaml) ("r-variantannotation" ,r-variantannotation))) (home-page "https://github.com/tgirke/systemPipeR") (synopsis "Next generation sequencing workflow and reporting environment") |