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| author | Pierre Neidhardt <mail@ambrevar.xyz> | 2019-05-18 19:26:38 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2019-08-08 15:18:32 +0300 |
| commit | 7d71557d4d3ca5bdd33eb8c9bdf0cd2aba624554 (patch) | |
| tree | de518f924136cf2ab6951ec82d4891c4de0d0d36 /gnu/packages/bioinformatics.scm | |
| parent | 70782dddffc2da05fed6aba35c3121a2265fd649 (diff) | |
| download | patches-7d71557d4d3ca5bdd33eb8c9bdf0cd2aba624554.tar patches-7d71557d4d3ca5bdd33eb8c9bdf0cd2aba624554.tar.gz | |
gnu: Add fastahack.
* gnu/packages/bioinformatics.scm (fastahack): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a3c83f73bb..4dae22082d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14962,3 +14962,36 @@ combinatorial configurations.\", G. Ehrlich - Journal of the ACM (JACM), (description "A tiny C library for managing SOM (Self-Organizing Maps) neural networks.") (license license:gpl3)))) + +(define-public fastahack + (let ((commit "c68cebb4f2e5d5d2b70cf08fbdf1944e9ab2c2dd")) + (package + (name "fastahack") + (version (git-version "0.0.0" "1" commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ekg/fastahack/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0hfdv67l9g611i2ck4l92pd6ygmsp9g1ph4zx1ni7qkpsikf0l19")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15 + #:phases + (modify-phases %standard-phases + (delete 'configure) ; There is no configure phase. + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (install-file "fastahack" bin)) + #t))))) + (home-page "https://github.com/ekg/fastahack") + (synopsis "Indexing and sequence extraction from FASTA files") + (description "Fastahack is a small application for indexing and +extracting sequences and subsequences from FASTA files. The included library +provides a FASTA reader and indexer that can be embedded into applications +which would benefit from directly reading subsequences from FASTA files. The +library automatically handles index file generation and use.") + (license (list license:expat license:gpl2))))) |