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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 21:15:28 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 21:41:55 +0100 |
| commit | a2b9d6a8d05aff0acba2d40ac45790d282c814bf (patch) | |
| tree | 656d2d6b92398dc06f400f25a9c0a22aecd2403c /gnu/packages/bioinformatics.scm | |
| parent | 6052264b56856a9769cc648ac21c1811934f6211 (diff) | |
| download | patches-a2b9d6a8d05aff0acba2d40ac45790d282c814bf.tar patches-a2b9d6a8d05aff0acba2d40ac45790d282c814bf.tar.gz | |
gnu: pplacer: Fetch sources from git.
* gnu/packages/bioinformatics.scm (pplacer)[source]: Fetch from git.
[arguments]: Make files writable; use INVOKE.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 9 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7b50cebd2a..62683ad07f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4310,19 +4310,20 @@ interrupted by stop codons. OrfM finds and prints these ORFs.") (license license:lgpl3+))) (define-public pplacer - (let ((commit "g807f6f3")) + (let ((commit "807f6f3")) (package (name "pplacer") ;; The commit should be updated with each version change. (version "1.1.alpha19") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/matsen/pplacer/archive/v" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/matsen/pplacer.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "0z1lnd2s8sh6kpzg106wzbh2szw7h0hvq8syd5a6wv4rmyyz6x0f")))) + (base32 "11ppbbbx20p2g9wj3ff64dhnarb12q79v7qh4rk0gj6lkbz4n7cn")))) (build-system ocaml-build-system) (arguments `(#:ocaml ,ocaml-4.01 @@ -4339,11 +4340,12 @@ interrupted by stop codons. OrfM finds and prints these ORFs.") (local-dir "cddlib_guix")) (mkdir local-dir) (with-directory-excursion local-dir - (system* "tar" "xvf" cddlib-src)) + (invoke "tar" "xvf" cddlib-src)) (let ((cddlib-src-folder (string-append local-dir "/" (list-ref (scandir local-dir) 2) "/lib-src"))) + (for-each make-file-writable (find-files "cdd_src" ".*")) (for-each (lambda (file) (copy-file file |