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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-02-27 17:37:32 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-02-27 17:38:17 +0100 |
| commit | 6c32e9b4dc7e7cbf6580e7b97d1c526cb15c6099 (patch) | |
| tree | 56f7956667afc03fca23c6691cd1bb0a5c35afa7 /gnu/packages/bioinformatics.scm | |
| parent | d24b3b02133e5e3ccc4236656c60377a369bd7b5 (diff) | |
| download | patches-6c32e9b4dc7e7cbf6580e7b97d1c526cb15c6099.tar patches-6c32e9b4dc7e7cbf6580e7b97d1c526cb15c6099.tar.gz | |
gnu: bedtools: Update to 2.29.2.
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.29.2.
[native-inputs]: Replace python-2 with python-wrapper.
[license]: Change to Expat.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 5 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 51ffa00860..2b13ad4839 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -410,7 +410,7 @@ computational cluster.") (define-public bedtools (package (name "bedtools") - (version "2.27.1") + (version "2.29.2") (source (origin (method url-fetch) (uri (string-append "https://github.com/arq5x/bedtools2/releases/" @@ -418,7 +418,7 @@ computational cluster.") "bedtools-" version ".tar.gz")) (sha256 (base32 - "1ndg5yknrxl4djx8ddzgk12rrbiidfpmkkg5z3f95jzryfxarhn8")))) + "0m3hk6548846w83a9s5drsczvy67n2azx41kj71n03klb2gbzwg3")))) (build-system gnu-build-system) (arguments '(#:test-target "test" @@ -427,7 +427,8 @@ computational cluster.") #:phases (modify-phases %standard-phases (delete 'configure)))) - (native-inputs `(("python" ,python-2))) + (native-inputs + `(("python" ,python-wrapper))) (inputs `(("samtools" ,samtools) ("zlib" ,zlib))) @@ -440,7 +441,7 @@ genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.") - (license license:gpl2))) + (license license:expat))) ;; Later releases of bedtools produce files with more columns than ;; what Ribotaper expects. |