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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-06-05 11:26:08 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-06-05 11:26:08 +0200 |
| commit | 1f94ba94082f706eac5e19d56ef6d72f54239743 (patch) | |
| tree | 3960338a8d6ed0617ce8c127276cefad1869b9bf /gnu/packages/bioinformatics.scm | |
| parent | 1ed386fc2695c287a16135d9e092df4f2df62dfc (diff) | |
| download | patches-1f94ba94082f706eac5e19d56ef6d72f54239743.tar patches-1f94ba94082f706eac5e19d56ef6d72f54239743.tar.gz | |
gnu: java-picard: Delete failing build phase.
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index dd7077ac9a..57150aefb2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3154,6 +3154,8 @@ manipulating HTS data.") #:jdk ,icedtea-8 #:phases (modify-phases %standard-phases + ;; FIXME: this phase fails with "duplicate entry: htsjdk/samtools/AbstractBAMFileIndex$1.class" + (delete 'generate-jar-indices) (add-after 'unpack 'use-our-htsjdk (lambda* (#:key inputs #:allow-other-keys) (substitute* "build.xml" |