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| author | Ben Woodcroft <donttrustben@gmail.com> | 2017-07-14 19:23:37 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2017-07-14 19:23:37 +1000 |
| commit | 06e372360eed08a1cbbb2081a591fbfa4785a2f2 (patch) | |
| tree | 93396cbc45af6c4bcf6c61aed505f607d2afd08e /gnu/packages/bioinformatics.scm | |
| parent | d6e63cf31cc113e310cd0e5dda9ac4f73a5caeae (diff) | |
| download | patches-06e372360eed08a1cbbb2081a591fbfa4785a2f2.tar patches-06e372360eed08a1cbbb2081a591fbfa4785a2f2.tar.gz | |
gnu: bowtie: Use 'modify-phases'.
* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Use 'modify-phases'
syntax.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 18 |
1 files changed, 8 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a9f6259897..b5ee9cc125 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1225,16 +1225,14 @@ errors at the end of reads.") "WITH_TBB=1" (string-append "prefix=" (assoc-ref %outputs "out"))) #:phases - (alist-delete - 'configure - (alist-replace - 'check - (lambda* (#:key outputs #:allow-other-keys) - (system* "perl" - "scripts/test/simple_tests.pl" - "--bowtie2=./bowtie2" - "--bowtie2-build=./bowtie2-build")) - %standard-phases)))) + (modify-phases %standard-phases + (delete 'configure) + (replace 'check + (lambda* (#:key outputs #:allow-other-keys) + (zero? (system* "perl" + "scripts/test/simple_tests.pl" + "--bowtie2=./bowtie2" + "--bowtie2-build=./bowtie2-build"))))))) (home-page "http://bowtie-bio.sourceforge.net/bowtie2/index.shtml") (synopsis "Fast and sensitive nucleotide sequence read aligner") (description |