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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-09-02 14:39:11 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-09-02 14:40:56 +0200 |
| commit | 32fcd898f0e73b34dd8f11af952b87707e461f7a (patch) | |
| tree | 31d5bb9bd135b823f27b5a7fa088dc55c383226a /gnu/packages/bioinformatics.scm | |
| parent | 91addfe05c14b6ee10890dfba43847a8a607819a (diff) | |
| download | patches-32fcd898f0e73b34dd8f11af952b87707e461f7a.tar patches-32fcd898f0e73b34dd8f11af952b87707e461f7a.tar.gz | |
gnu: r-seurat: Update to 3.1.0.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.0.
[propagated-inputs]: Add r-leiden, r-rcppannoy, and r-uwot.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7d6d5e8c48..2c6648b294 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9457,13 +9457,13 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.") (define-public r-seurat (package (name "r-seurat") - (version "3.0.2") + (version "3.1.0") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "016fgcmjz3sjfxdvam5hd7mdxpmpnc7f6p5zqlh97m21dgn5vpqn")))) + "0icxndnnkkmmr9hhd01dv3w8pih7x9r0rlp3fq9pk3qajp9gmlyq")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) (propagated-inputs @@ -9480,6 +9480,7 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.") ("r-igraph" ,r-igraph) ("r-irlba" ,r-irlba) ("r-kernsmooth" ,r-kernsmooth) + ("r-leiden" ,r-leiden) ("r-lmtest" ,r-lmtest) ("r-mass" ,r-mass) ("r-matrix" ,r-matrix) @@ -9490,6 +9491,7 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.") ("r-rann" ,r-rann) ("r-rcolorbrewer" ,r-rcolorbrewer) ("r-rcpp" ,r-rcpp) + ("r-rcppannoy" ,r-rcppannoy) ("r-rcppeigen" ,r-rcppeigen) ("r-rcppprogress" ,r-rcppprogress) ("r-reticulate" ,r-reticulate) @@ -9500,7 +9502,8 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.") ("r-scales" ,r-scales) ("r-sctransform" ,r-sctransform) ("r-sdmtools" ,r-sdmtools) - ("r-tsne" ,r-tsne))) + ("r-tsne" ,r-tsne) + ("r-uwot" ,r-uwot))) (home-page "http://www.satijalab.org/seurat") (synopsis "Seurat is an R toolkit for single cell genomics") (description |