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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:33:17 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:33:17 +0100 |
| commit | 7bc5d1b0e1f1265028f221a51d7ee1c526132f65 (patch) | |
| tree | 86a63c5a3cf9953c268946342a6f89d321f873db /gnu/packages/bioinformatics.scm | |
| parent | 13dabd6947c61789c231de96be1fb7a8116db0cd (diff) | |
| download | patches-7bc5d1b0e1f1265028f221a51d7ee1c526132f65.tar patches-7bc5d1b0e1f1265028f221a51d7ee1c526132f65.tar.gz | |
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Move from here...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 35 |
1 files changed, 0 insertions, 35 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d45dedb6c9..b9973ba81f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8105,41 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).") (license license:lgpl2.0+))) -(define-public r-txdb-mmusculus-ucsc-mm10-knowngene - (package - (name "r-txdb-mmusculus-ucsc-mm10-knowngene") - (version "3.4.4") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "TxDb.Mmusculus.UCSC.mm10.knownGene_" - version ".tar.gz")) - (sha256 - (base32 - "01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39")))) - (properties - `((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-annotationdbi" ,r-annotationdbi))) - (home-page - "https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/") - (synopsis "Annotation package for TxDb knownGene object(s) for Mouse") - (description - "This package loads a TxDb object, which is an R interface to -prefabricated databases contained in this package. This package provides -the TxDb object of Mouse data as provided by UCSC (mm10, December 2011) -based on the knownGene track.") - (license license:artistic2.0))) - (define-public r-motifrg (package (name "r-motifrg") |