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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-09-21 22:45:33 +0200
committerRicardo Wurmus <rekado@elephly.net>2016-09-26 03:25:17 +0200
commite8163773746bad6e20072d52b577d5209ba47cdc (patch)
tree78cf68128955854f58829b25d8747d70f5ccd9ec /gnu/packages/bioinformatics.scm
parent9e330278eee73f9f79a7e457abe41be90b72a86d (diff)
downloadpatches-e8163773746bad6e20072d52b577d5209ba47cdc.tar
patches-e8163773746bad6e20072d52b577d5209ba47cdc.tar.gz
gnu: Add r-annotationforge.
* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0787d4bfeb..27646ff34c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5170,6 +5170,35 @@ differential expression based on a model using the negative binomial
distribution.")
(license license:lgpl3+)))
+(define-public r-annotationforge
+ (package
+ (name "r-annotationforge")
+ (version "1.14.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnnotationForge" version))
+ (sha256
+ (base32
+ "1vkdd1qdv5g680ipw4vwjvn52xn66xpg6ngmwyknz77ckxnnpf4q"))))
+ (properties
+ `((upstream-name . "AnnotationForge")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-dbi" ,r-dbi)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xml" ,r-xml)))
+ (home-page "http://bioconductor.org/packages/AnnotationForge")
+ (synopsis "Code for building annotation database packages")
+ (description
+ "This package provides code for generating Annotation packages and their
+databases. Packages produced are intended to be used with AnnotationDbi.")
+ (license license:artistic2.0)))
+
(define-public vsearch
(package
(name "vsearch")