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| author | Ben Woodcroft <donttrustben@gmail.com> | 2016-06-10 19:45:14 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-06-14 07:57:09 +1000 |
| commit | e4a44a6aa5b6dcda39ab8c347d1dc68a4cc7e4f9 (patch) | |
| tree | c1a146aeb0d764b26fa790169e2bb659ed0e9663 /gnu/packages/bioinformatics.scm | |
| parent | d3ef652aa15b899084613dd1d41ac7722dc582b3 (diff) | |
| download | patches-e4a44a6aa5b6dcda39ab8c347d1dc68a4cc7e4f9.tar patches-e4a44a6aa5b6dcda39ab8c347d1dc68a4cc7e4f9.tar.gz | |
gnu: Add ruby-bio-kseq.
* gnu/packages/bioinformatics.scm (ruby-bio-kseq): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 98b00348dd..58877f7c61 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3926,6 +3926,34 @@ clusters.") (home-page "https://sourceforge.net/projects/pardre/") (license license:gpl3+))) +(define-public ruby-bio-kseq + (package + (name "ruby-bio-kseq") + (version "0.0.2") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "bio-kseq" version)) + (sha256 + (base32 + "1xyaha46khb5jc6wzkbf7040jagac49jbimn0vcrzid0j8jdikrz")))) + (build-system ruby-build-system) + (arguments + `(#:test-target "spec")) + (native-inputs + `(("bundler" ,bundler) + ("ruby-rspec" ,ruby-rspec) + ("ruby-rake-compiler" ,ruby-rake-compiler))) + (inputs + `(("zlib" ,zlib))) + (synopsis "Ruby bindings for the kseq.h FASTA/Q parser") + (description + "@code{Bio::Kseq} provides ruby bindings to the @code{kseq.h} FASTA and +FASTQ parsing code. It provides a fast iterator over sequences and their +quality scores.") + (home-page "https://github.com/gusevfe/bio-kseq") + (license license:expat))) + (define-public bio-locus (package (name "bio-locus") |