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authorEfraim Flashner <efraim@flashner.co.il>2020-01-08 11:30:36 +0200
committerEfraim Flashner <efraim@flashner.co.il>2020-01-09 14:30:37 +0200
commit612d6a8e5b65774cbebf5b26515ffa9fbba57507 (patch)
treee525e4fdb65ae592f0eb293abbb771bca8313f04 /gnu/packages/bioinformatics.scm
parent2673620f2455d89e3b2641d8c479ca00dbad824c (diff)
downloadpatches-612d6a8e5b65774cbebf5b26515ffa9fbba57507.tar
patches-612d6a8e5b65774cbebf5b26515ffa9fbba57507.tar.gz
gnu: tabixpp: Update to 1.1.0.
* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.0. [source]: Add snippet to remove vendored library. [arguments]: Adjust custom 'build phase to fix INCLUDES.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm9
1 files changed, 7 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 28c5dd11cf..f801639472 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14869,7 +14869,7 @@ mutations from scRNA-Seq data.")
(define-public tabixpp
(package
(name "tabixpp")
- (version "1.0.0")
+ (version "1.1.0")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -14877,7 +14877,11 @@ mutations from scRNA-Seq data.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "08vx6nsipk971cyr8z53rnzwkvlld63kcn1fw0pwddynz91xfny8"))))
+ (base32 "1k2a3vbq96ic4lw72iwp5s3mwwc4xhdffjj584yn6l9637q9j1yd"))
+ (modules '((guix build utils)))
+ (snippet
+ `(begin
+ (delete-file-recursively "htslib") #t))))
(build-system gnu-build-system)
(inputs
`(("htslib" ,htslib)
@@ -14893,6 +14897,7 @@ mutations from scRNA-Seq data.")
(let ((htslib-ref (assoc-ref inputs "htslib")))
(invoke "make"
(string-append "HTS_LIB=" htslib-ref "/lib/libhts.a")
+ (string-append "INCLUDES= -I" htslib-ref "/include/htslib")
"HTS_HEADERS=" ; No need to check for headers here.
(string-append "LIBPATH=-L. -L" htslib-ref "/include")))))
(replace 'install