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| author | Ben Woodcroft <b.woodcroft@uq.edu.au> | 2015-06-09 16:10:51 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-06-12 12:57:30 +0200 |
| commit | 1e44cf8b0ffe88f2675718c0a0f5119c87a8bf6a (patch) | |
| tree | f40c3353e6292b69af34e5e46bb58f2b54ad00e4 /gnu/packages/bioinformatics.scm | |
| parent | 47da6268c45796d858eccff601e17ce11a7aeb62 (diff) | |
| download | patches-1e44cf8b0ffe88f2675718c0a0f5119c87a8bf6a.tar patches-1e44cf8b0ffe88f2675718c0a0f5119c87a8bf6a.tar.gz | |
gnu: Add OrfM.
* gnu/packages/bioinformatics.scm (orfm): New variable.
Signed-off-by: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 21 |
1 files changed, 21 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index df627fbe48..7175ecf41d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1101,6 +1101,27 @@ RNA-Seq, the MISO model uses Bayesian inference to compute the probability that a read originated from a particular isoform.") (license license:gpl2))) +(define-public orfm + (package + (name "orfm") + (version "0.3.2") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/wwood/OrfM/releases/download/v" + version "/orfm-" version ".tar.gz")) + (sha256 + (base32 + "00jqvlspj9662ni9r4n1snxfnwkzc02i46g5nk1kwjshi6v3vgg3")))) + (build-system gnu-build-system) + (inputs `(("zlib" ,zlib))) + (synopsis "Simple and not slow open reading frame (ORF) caller") + (description + "An ORF caller finds stretches of DNA that when translated are not +interrupted by stop codons. OrfM finds and prints these ORFs.") + (home-page "https://github.com/wwood/OrfM") + (license license:lgpl3+))) + (define-public python2-pbcore (package (name "python2-pbcore") |