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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-03-19 20:53:27 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-03-19 21:06:51 +0100 |
| commit | 096589035ed154b6ecb4619ca8cdde208be1b8da (patch) | |
| tree | 5c5eeb3698240fd45ffd6a9141533659b28b700e /gnu/packages/bioinformatics.scm | |
| parent | 51237011bfa1da1374fbd84581e337d6b54a5fc9 (diff) | |
| download | patches-096589035ed154b6ecb4619ca8cdde208be1b8da.tar patches-096589035ed154b6ecb4619ca8cdde208be1b8da.tar.gz | |
gnu: bismark: Fix references to gunzip.
* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to
gunzip executable.
[inputs]: Add gzip.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 11 |
1 files changed, 10 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a6dcc63bf3..af994c6a89 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11514,7 +11514,7 @@ Browser.") (delete 'configure) (delete 'build) (replace 'install - (lambda* (#:key outputs #:allow-other-keys) + (lambda* (#:key inputs outputs #:allow-other-keys) (let ((bin (string-append (assoc-ref outputs "out") "/bin")) (docdir (string-append (assoc-ref outputs "out") @@ -11537,7 +11537,16 @@ Browser.") scripts) (for-each (lambda (file) (install-file file docdir)) docs) + ;; Fix references to gunzip + (substitute* (map (lambda (file) + (string-append bin "/" file)) + scripts) + (("\"gunzip -c") + (string-append "\"" (assoc-ref inputs "gzip") + "/bin/gunzip -c"))) #t)))))) + (inputs + `(("gzip" ,gzip))) (home-page "http://www.bioinformatics.babraham.ac.uk/projects/bismark/") (synopsis "Map bisulfite treated sequence reads and analyze methylation") (description "Bismark is a program to map bisulfite treated sequencing |