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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:16:33 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:16:33 +0100 |
| commit | 66e35ce63b346f5f13b2d48a76bc0da14637c58c (patch) | |
| tree | a0cb0d94768822c2740a759e365ad021dc6d90f3 /gnu/packages/bioinformatics.scm | |
| parent | bfb93b4889a2352f47df56dedf0a10cd2dfc441c (diff) | |
| download | patches-66e35ce63b346f5f13b2d48a76bc0da14637c58c.tar patches-66e35ce63b346f5f13b2d48a76bc0da14637c58c.tar.gz | |
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move
from here...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to
here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 0 insertions, 32 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 73d6ecf135..82f45b30c3 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6709,38 +6709,6 @@ annotation infrastructure.") "This package provides a pipeline for the analysis of GRO-seq data.") (license license:gpl3+))) -(define-public r-txdb-hsapiens-ucsc-hg19-knowngene - (package - (name "r-txdb-hsapiens-ucsc-hg19-knowngene") - (version "3.2.2") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://bioconductor.org/packages/" - "release/data/annotation/src/contrib" - "/TxDb.Hsapiens.UCSC.hg19.knownGene_" - version ".tar.gz")) - (sha256 - (base32 - "1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86")))) - (properties - `((upstream-name . "TxDb.Hsapiens.UCSC.hg19.knownGene"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-genomicfeatures" ,r-genomicfeatures))) - (home-page - "https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/") - (synopsis "Annotation package for human genome in TxDb format") - (description - "This package provides an annotation database of Homo sapiens genome -data. It is derived from the UCSC hg19 genome and based on the \"knownGene\" -track. The database is exposed as a @code{TxDb} object.") - (license license:artistic2.0))) - (define-public r-sparql (package (name "r-sparql") |