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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-01-17 22:41:05 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-01-21 14:18:09 +0100 |
| commit | c3b2ab9d3bcc0bd8562365b6720c7b135e877f55 (patch) | |
| tree | 8134fe7ee053acede180e3f269a16a58670ea4f0 /gnu/packages/bioinformatics.scm | |
| parent | b0b7150b6ce275c3da64588726c936bfab8dc290 (diff) | |
| download | patches-c3b2ab9d3bcc0bd8562365b6720c7b135e877f55.tar patches-c3b2ab9d3bcc0bd8562365b6720c7b135e877f55.tar.gz | |
gnu: Add libgff.
* gnu/packages/bioinformatics.scm (libgff): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 25 |
1 files changed, 24 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f0bfa9300b..f5e32ffa4d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014, 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2016, 2017 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> @@ -11109,3 +11109,26 @@ for alignment. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate as existing quantification tools.") (license license:bsd-2))) + +(define-public libgff + (package + (name "libgff") + (version "1.0") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/Kingsford-Group/" + "libgff/archive/v" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0vc4nxyhlm6g9vvmx5l4lfs5pnvixsv1hiiy4kddf2y3p6jna8ls")))) + (build-system cmake-build-system) + (arguments `(#:tests? #f)) ; no tests included + (home-page "https://github.com/Kingsford-Group/libgff") + (synopsis "Parser library for reading/writing GFF files") + (description "This is a simple \"libraryfication\" of the GFF/GTF parsing +code that is used in the Cufflinks codebase. The goal of this library is to +provide this functionality without the necessity of drawing in a heavy-weight +dependency like SeqAn.") + (license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt")))) |