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authorRicardo Wurmus <rekado@elephly.net>2019-03-06 21:31:41 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 21:31:41 +0100
commit13dabd6947c61789c231de96be1fb7a8116db0cd (patch)
treeee08a3699c1966409cb93116d42b60190a9c2b1c /gnu/packages/bioinformatics.scm
parent0c792ffbd1fe52533676a501bfc54c2a33a69351 (diff)
downloadpatches-13dabd6947c61789c231de96be1fb7a8116db0cd.tar
patches-13dabd6947c61789c231de96be1fb7a8116db0cd.tar.gz
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3): ...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm32
1 files changed, 0 insertions, 32 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7243ee1729..d45dedb6c9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8140,38 +8140,6 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
based on the knownGene track.")
(license license:artistic2.0)))
-(define-public r-bsgenome-dmelanogaster-ucsc-dm3
- (package
- (name "r-bsgenome-dmelanogaster-ucsc-dm3")
- (version "1.4.0")
- (source (origin
- (method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/"
- "BSgenome.Dmelanogaster.UCSC.dm3_"
- version ".tar.gz"))
- (sha256
- (base32
- "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
- (properties
- `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
- (build-system r-build-system)
- ;; As this package provides little more than a very large data file it
- ;; doesn't make sense to build substitutes.
- (arguments `(#:substitutable? #f))
- (propagated-inputs
- `(("r-bsgenome" ,r-bsgenome)))
- (home-page
- "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/")
- (synopsis "Full genome sequences for Fly")
- (description
- "This package provides full genome sequences for Drosophila
-melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
-Biostrings objects.")
- (license license:artistic2.0)))
-
(define-public r-motifrg
(package
(name "r-motifrg")