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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-02-20 16:41:50 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2015-02-20 19:31:53 +0100 |
| commit | 85652f599a7a9574a26aefc4bdd36f6b6710a7c0 (patch) | |
| tree | 8d546e1922510c0a7352348be81151b31aa1a9bc /gnu/packages/bioinformatics.scm | |
| parent | 5eb86b64d19ea1afeb1f6f21994a29ebbd9005b8 (diff) | |
| download | patches-85652f599a7a9574a26aefc4bdd36f6b6710a7c0.tar patches-85652f599a7a9574a26aefc4bdd36f6b6710a7c0.tar.gz | |
gnu: Add HTSeq.
* gnu/packages/bioinformatics.scm (htseq): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c13e6499b7..b64dab73cd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -311,6 +311,30 @@ several alignment strategies enable effective alignment of RNA-seq reads, in particular, reads spanning multiple exons.") (license license:gpl3+))) +(define-public htseq + (package + (name "htseq") + (version "0.6.1") + (source (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/H/HTSeq/HTSeq-" + version ".tar.gz")) + (sha256 + (base32 + "1i85ppf2j2lj12m0x690qq5nn17xxk23pbbx2c83r8ayb5wngzwv")))) + (build-system python-build-system) + (arguments `(#:python ,python-2)) ; only Python 2 is supported + (inputs + `(("python-numpy" ,python2-numpy) + ("python-setuptools" ,python2-setuptools))) + (home-page "http://www-huber.embl.de/users/anders/HTSeq/") + (synopsis "Analysing high-throughput sequencing data with Python") + (description + "HTSeq is a Python package that provides infrastructure to process data +from high-throughput sequencing assays.") + (license license:gpl3+))) + (define-public rseqc (package (name "rseqc") |