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| author | Andreas Enge <andreas@enge.fr> | 2015-09-20 00:32:45 +0200 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2015-09-20 00:32:45 +0200 |
| commit | a5002ae77c00693792ae0024b290cc24fb1d4328 (patch) | |
| tree | 2edb1022c6a506c1274627e1c456b0c00d81e18e /gnu/packages/bioinformatics.scm | |
| parent | e49b339608d63ea980c24fec01dc94cd59f19335 (diff) | |
| download | patches-a5002ae77c00693792ae0024b290cc24fb1d4328.tar patches-a5002ae77c00693792ae0024b290cc24fb1d4328.tar.gz | |
gnu: Add R/qtl.
* gnu/packages/bioinformatics.scm (r-qtl): New variable.
Co-authored-by: Pjotr Prins <pjotr.guix@thebird.nl>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 37bd3339d3..2e31d85b2d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1,6 +1,8 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014, 2015 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Ben Woodcroft <donttrustben@gmail.com> +;;; Copyright © 2015 Pjotr Prins <pjotr.guix@thebird.nl> +;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -27,6 +29,7 @@ #:use-module (guix build-system cmake) #:use-module (guix build-system perl) #:use-module (guix build-system python) + #:use-module (guix build-system r) #:use-module (guix build-system ruby) #:use-module (guix build-system trivial) #:use-module (gnu packages) @@ -2743,3 +2746,28 @@ BLAST, KEGG, GenBank, MEDLINE and GO.") ;; Code is released under Ruby license, except for setup ;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+) (license (list license:ruby license:lgpl2.1+ license:gpl2+ )))) + +(define-public r-qtl + (package + (name "r-qtl") + (version "1.37-11") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cran/src/contrib/qtl_" + version ".tar.gz")) + (sha256 + (base32 + "0h20d36mww7ljp51pfs66xq33yq4b4fwq9nsh02dpmfhlaxgx1xi")))) + (build-system r-build-system) + (home-page "http://rqtl.org/") + (synopsis "R package for analyzing QTL experiments in genetics") + (description "R/qtl is an extension library for the R statistics +system. It is used to analyze experimental crosses for identifying +genes contributing to variation in quantitative traits (so-called +quantitative trait loci, QTLs). + +Using a hidden Markov model, R/qtl allows to estimate genetic maps, to +identify genotyping errors, and to perform single-QTL and two-QTL, +two-dimensional genome scans.") + (license license:gpl3))) |