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| author | Pjotr Prins <pjotr.public12@thebird.nl> | 2015-09-14 16:32:27 +0200 |
|---|---|---|
| committer | David Thompson <dthompson2@worcester.edu> | 2015-09-14 12:06:04 -0400 |
| commit | 9c38b54027ee009f9ff604342ae99c4ebd7958a6 (patch) | |
| tree | 8b4cd6f6c40624f3e909c90043f0024be464a686 /gnu/packages/bioinformatics.scm | |
| parent | 801a0a221956dfeeddf7a8c85a66ff106dc33d7a (diff) | |
| download | patches-9c38b54027ee009f9ff604342ae99c4ebd7958a6.tar patches-9c38b54027ee009f9ff604342ae99c4ebd7958a6.tar.gz | |
gnu: Add bio-locus.
* gnu/packages/bioinformatics.scm (bio-locus): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 03eb2dfe30..1f3421126c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -27,6 +27,7 @@ #:use-module (guix build-system cmake) #:use-module (guix build-system perl) #:use-module (guix build-system python) + #:use-module (guix build-system ruby) #:use-module (guix build-system trivial) #:use-module (gnu packages) #:use-module (gnu packages algebra) @@ -45,6 +46,7 @@ #:use-module (gnu packages popt) #:use-module (gnu packages protobuf) #:use-module (gnu packages python) + #:use-module (gnu packages ruby) #:use-module (gnu packages statistics) #:use-module (gnu packages tbb) #:use-module (gnu packages textutils) @@ -2616,3 +2618,27 @@ data in the form of VCF files.") ;; The license is declared as LGPLv3 in the README and ;; at http://vcftools.sourceforge.net/license.html (license license:lgpl3))) + +(define-public bio-locus + (package + (name "bio-locus") + (version "0.0.7") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "bio-locus" version)) + (sha256 + (base32 + "02vmrxyimkj9sahsp4zhfhnmbvz6dbbqz1y01vglf8cbwvkajfl0")))) + (build-system ruby-build-system) + (native-inputs + `(("ruby-rspec" ,ruby-rspec))) + (synopsis "Tool for fast querying of genome locations") + (description + "Bio-locus is a tabix-like tool for fast querying of genome +locations. Many file formats in bioinformatics contain records that +start with a chromosome name and a position for a SNP, or a start-end +position for indels. Bio-locus allows users to store this chr+pos or +chr+pos+alt information in a database.") + (home-page "https://github.com/pjotrp/bio-locus") + (license license:expat))) |