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| author | Ricardo Wurmus <rekado@elephly.net> | 2016-07-12 12:19:39 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-07-12 12:19:39 +0200 |
| commit | 17dc32a40033241500123ac2c1a19709820000a7 (patch) | |
| tree | 9d1a2c373186170cfff3a32a3803fc3ca56c88a3 /gnu/packages/bioinformatics.scm | |
| parent | 9a8f309cf1f654b9775caf0ee1bc65ee274d4117 (diff) | |
| download | patches-17dc32a40033241500123ac2c1a19709820000a7.tar patches-17dc32a40033241500123ac2c1a19709820000a7.tar.gz | |
gnu: Add Ribotaper.
* gnu/packages/bioinformatics.scm (ribotaper): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 355b578623..f0a409d22f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -273,6 +273,36 @@ BED, GFF/GTF, VCF.") (base32 "05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf")))))) +(define-public ribotaper + (package + (name "ribotaper") + (version "1.3.1") + (source (origin + (method url-fetch) + (uri (string-append "https://ohlerlab.mdc-berlin.de/" + "files/RiboTaper/RiboTaper_Version_" + version ".tar.gz")) + (sha256 + (base32 + "0ykjbps1y3z3085q94npw8i9x5gldc6shy8vlc08v76zljsm07hv")))) + (build-system gnu-build-system) + (inputs + `(("bedtools" ,bedtools-2.18) + ("samtools" ,samtools-0.1) + ("r" ,r) + ("r-foreach" ,r-foreach) + ("r-xnomial" ,r-xnomial) + ("r-domc" ,r-domc) + ("r-multitaper" ,r-multitaper) + ("r-seqinr" ,r-seqinr))) + (home-page "https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/") + (synopsis "Define translated ORFs using ribosome profiling data") + (description + "Ribotaper is a method for defining translated @dfn{open reading +frames} (ORFs) using ribosome profiling (ribo-seq) data. This package +provides the Ribotaper pipeline.") + (license license:gpl3+))) + (define-public bioawk (package (name "bioawk") |