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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-06-17 12:14:39 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-06-23 13:13:03 +0200 |
| commit | 0ec8b206d496b3c976d2a5a7cbf7ac3f136181e6 (patch) | |
| tree | a237976d49603193ba822494e00724375c4b43a5 /gnu/packages/bioinformatics.scm | |
| parent | c4325f626944b0ee45e670c4e2550f77a303ca16 (diff) | |
| download | patches-0ec8b206d496b3c976d2a5a7cbf7ac3f136181e6.tar patches-0ec8b206d496b3c976d2a5a7cbf7ac3f136181e6.tar.gz | |
gnu: miso: Install executables.
* gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use
"setuptools" so that executables are built.
* gnu/packages/bioinformatics.scm (miso)[native-inputs]: Add "python2-mock"
and "python2-pytz".
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 7 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 00bf6915bc..6b87e8962b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1230,9 +1230,12 @@ sequencing tag position and orientation.") (base32 "0x446867az8ir0z8c1vjqffkp0ma37wm4sylixnkhgawllzx8v5w")) (modules '((guix build utils))) - ;; use "gcc" instead of "cc" for compilation (snippet '(substitute* "setup.py" + ;; Use setuptools, or else the executables are not + ;; installed. + (("distutils.core") "setuptools") + ;; use "gcc" instead of "cc" for compilation (("^defines") "cc.set_executables( compiler='gcc', @@ -1250,7 +1253,9 @@ linker_so='gcc -shared'); defines"))))) ("python-scipy" ,python2-scipy) ("python-matplotlib" ,python2-matplotlib))) (native-inputs - `(("python-setuptools" ,python2-setuptools))) + `(("python-mock" ,python2-mock) ;for tests + ("python-pytz" ,python2-pytz) ;for tests + ("python-setuptools" ,python2-setuptools))) (home-page "http://genes.mit.edu/burgelab/miso/index.html") (synopsis "Mixture of Isoforms model for RNA-Seq isoform quantitation") (description |