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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-02-26 13:14:57 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-02-26 14:07:32 +0100 |
| commit | b38dd34f40ff9a779f9e8faf2c8d3739b6d6270f (patch) | |
| tree | 4a48b5d761d5b62c43f636b2ae3d66bfca702158 /gnu/packages/bioinformatics.scm | |
| parent | a86fc40dc384ae237b10a1d401f984c6f277aa88 (diff) | |
| download | patches-b38dd34f40ff9a779f9e8faf2c8d3739b6d6270f.tar patches-b38dd34f40ff9a779f9e8faf2c8d3739b6d6270f.tar.gz | |
gnu: crossmap: Update to 0.3.8.
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.3.8.
[arguments]: Remove to build with default Python.
[inputs]: Add python-pybigwig; replace python2-bx-python, python2-numpy, and
python2-pysam with their Python 3 variants.
[native-inputs]: Replace python2-cython and python2-nose with their Python 3
variants.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 8 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7f2a852fb0..1f17c019f0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2272,23 +2272,23 @@ time.") (define-public crossmap (package (name "crossmap") - (version "0.2.9") + (version "0.3.8") (source (origin (method url-fetch) (uri (pypi-uri "CrossMap" version)) (sha256 (base32 - "1byhclrqnqpvc1rqkfh4jwj6yhn0x9y7jk47i0qcjlhk0pjkw92p")))) + "1sb2f2qbxya4fzw3yjl09vbrs8vfmw22zrygrvz004sf9gb1vkan")))) (build-system python-build-system) - (arguments `(#:python ,python-2)) (inputs - `(("python-bx-python" ,python2-bx-python) - ("python-numpy" ,python2-numpy) - ("python-pysam" ,python2-pysam) + `(("python-bx-python" ,python-bx-python) + ("python-numpy" ,python-numpy) + ("python-pybigwig" ,python-pybigwig) + ("python-pysam" ,python-pysam) ("zlib" ,zlib))) (native-inputs - `(("python-cython" ,python2-cython) - ("python-nose" ,python2-nose))) + `(("python-cython" ,python-cython) + ("python-nose" ,python-nose))) (home-page "http://crossmap.sourceforge.net/") (synopsis "Convert genome coordinates between assemblies") (description |