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authorRoel Janssen <roel@gnu.org>2016-10-27 20:07:05 +0200
committerRoel Janssen <roel@gnu.org>2016-10-27 20:07:05 +0200
commit7500e42b3e51fa9ba5fb2ba552f168081b7f044a (patch)
tree2e16a62d53bac5f9151a808e427f968a4a3e776d /gnu/packages/bioinformatics.scm
parent327be74720bff418e611e399f92a4182a98e9750 (diff)
downloadpatches-7500e42b3e51fa9ba5fb2ba552f168081b7f044a.tar
patches-7500e42b3e51fa9ba5fb2ba552f168081b7f044a.tar.gz
gnu: Add r-mutationalpatterns.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm33
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fa35531868..4e9397e14e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7394,6 +7394,39 @@ library implementing most of the pipeline's features.")
@dfn{RNA-centric annotation system} (RCAS).")
(license license:agpl3+)))
+(define-public r-mutationalpatterns
+ (package
+ (name "r-mutationalpatterns")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MutationalPatterns" version))
+ (sha256
+ (base32
+ "1a3c2bm0xx0q4gf98jiw74msmdf2fr8rbsdysd5ww9kqlzmsbr17"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gridextra" ,r-gridextra)
+ ("r-iranges" ,r-iranges)
+ ("r-nmf" ,r-nmf)
+ ("r-plyr" ,r-plyr)
+ ("r-pracma" ,r-pracma)
+ ("r-reshape2" ,r-reshape2)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "http://bioconductor.org/packages/MutationalPatterns/")
+ (synopsis "Extract and visualize mutational patterns in genomic data")
+ (description "This package provides an extensive toolset for the
+characterization and visualization of a wide range of mutational patterns
+in SNV base substitution data.")
+ (license license:expat)))
+
(define-public emboss
(package
(name "emboss")