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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-04-27 11:48:00 +0200
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-04-27 15:12:47 +0200
commit4ca009c03674529fbeb85aa559f867364845fe0b (patch)
tree4ea56e62642c2b516604060f2d40a9177f22f391 /gnu/packages/bioinformatics.scm
parent02ed8be3acb20eac54086c78829f858184a9fc8c (diff)
downloadpatches-4ca009c03674529fbeb85aa559f867364845fe0b.tar
patches-4ca009c03674529fbeb85aa559f867364845fe0b.tar.gz
gnu: flexbar: Enable tests.
* gnu/packages/bioinformatics.scm (flexbar): Enable tests.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm15
1 files changed, 10 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ccfda627f3..bcb7eba48f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -623,15 +623,20 @@ results. The FASTX-Toolkit tools perform some of these preprocessing tasks.")
"13jaykc3y1x8y5nn9j8ljnb79s5y51kyxz46hdmvvjj6qhyympmf"))))
(build-system cmake-build-system)
(arguments
- `(;; There is no test target, although there is a directory containing
- ;; test data and scripts (launched by flexbar_validate.sh).
- #:tests? #f
- #:configure-flags (list
+ `(#:configure-flags (list
(string-append "-DFLEXBAR_BINARY_DIR="
(assoc-ref %outputs "out")
"/bin/"))
#:phases
- (alist-delete 'install %standard-phases)))
+ (alist-replace
+ 'check
+ (lambda* (#:key outputs #:allow-other-keys)
+ (setenv "PATH" (string-append
+ (assoc-ref outputs "out") "/bin:"
+ (getenv "PATH")))
+ (chdir "../flexbar_v2.5_src/test")
+ (zero? (system* "bash" "flexbar_validate.sh")))
+ (alist-delete 'install %standard-phases))))
(inputs
`(("tbb" ,tbb)
("zlib" ,zlib)))