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author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-29 22:56:12 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-30 08:55:46 +0100 |
commit | ec12e53736f212d700587e096ebee15ffc118c46 (patch) | |
tree | 78da6c92d5d46a121d3c492c7f5a5e84872ef61b /gnu/packages/bioconductor.scm | |
parent | c8310056f45e7395976773ada517aee1d41c2d9b (diff) | |
download | patches-ec12e53736f212d700587e096ebee15ffc118c46.tar patches-ec12e53736f212d700587e096ebee15ffc118c46.tar.gz |
gnu: Add r-xcms.
* gnu/packages/bioconductor.scm (r-xcms): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4a73edf02c..750311fd7b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4004,3 +4004,39 @@ genes.") data mainly through the use of wavelet transforms. It supports peak detection based on @dfn{Continuous Wavelet Transform} (CWT).") (license license:lgpl2.0+))) + +(define-public r-xcms + (package + (name "r-xcms") + (version "3.4.4") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "xcms" version)) + (sha256 + (base32 + "073f25m7y8z4560k93d99fv72pr7nrgrp054zssi7jhas4l3ddww")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-lattice" ,r-lattice) + ("r-massspecwavelet" ,r-massspecwavelet) + ("r-msnbase" ,r-msnbase) + ("r-multtest" ,r-multtest) + ("r-mzr" ,r-mzr) + ("r-plyr" ,r-plyr) + ("r-protgenerics" ,r-protgenerics) + ("r-rann" ,r-rann) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-robustbase" ,r-robustbase) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://bioconductor.org/packages/xcms/") + (synopsis "LC/MS and GC/MS mass spectrometry data analysis") + (description + "This package provides a framework for processing and visualization of +chromatographically separated and single-spectra mass spectral data. It +imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. It preprocesses +data for high-throughput, untargeted analyte profiling.") + (license license:gpl2+))) |