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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:29:20 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:29:20 +0100 |
| commit | b7d93cf5087642103ae4a1f19ae38876d46c2b6c (patch) | |
| tree | a9df96d813f804a8c4f3d4088adbd345298e778c /gnu/packages/bioconductor.scm | |
| parent | c3adc8305465318e3d83f2a881ab54076e288a0a (diff) | |
| download | patches-b7d93cf5087642103ae4a1f19ae38876d46c2b6c.tar patches-b7d93cf5087642103ae4a1f19ae38876d46c2b6c.tar.gz | |
gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 936f521245..24504d0514 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -33,6 +33,38 @@ #:use-module (gnu packages statistics) #:use-module (gnu packages web)) +(define-public r-bsgenome-celegans-ucsc-ce6 + (package + (name "r-bsgenome-celegans-ucsc-ce6") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Celegans.UCSC.ce6_" + version ".tar.gz")) + (sha256 + (base32 + "0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9")))) + (properties + `((upstream-name . "BSgenome.Celegans.UCSC.ce6"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/") + (synopsis "Full genome sequences for Worm") + (description + "This package provides full genome sequences for Caenorhabditis +elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings +objects.") + (license license:artistic2.0))) + (define-public r-bsgenome-dmelanogaster-ucsc-dm6 (package (name "r-bsgenome-dmelanogaster-ucsc-dm6") |