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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-06-12 11:02:14 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-06-12 11:07:37 +0200 |
| commit | ae6fa185af4f4fd81d933f229ea370034c26cfdf (patch) | |
| tree | 3f03b60dbd2ce75fbfc7b759a44bbc24a3c35514 /gnu/packages/bioconductor.scm | |
| parent | 2444abd9c124cc55f8f19a0462e06a2094f25a9d (diff) | |
| download | patches-ae6fa185af4f4fd81d933f229ea370034c26cfdf.tar patches-ae6fa185af4f4fd81d933f229ea370034c26cfdf.tar.gz | |
gnu: Add r-annotatr.
* gnu/packages/bioconductor.scm (r-annotatr): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ff159638b3..c77e78a0f2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4677,3 +4677,42 @@ Forest, and SVM binary classifiers. The signatures and the corresponding 'restricted' models are returned, enabling future predictions on new datasets.") (license license:cecill))) + +(define-public r-annotatr + (package + (name "r-annotatr") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "annotatr" version)) + (sha256 + (base32 + "1zlhy6swfgqjhhcqn8c6akxd4c4z8p85swfh095imji7hxnlhh1f")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-annotationhub" ,r-annotationhub) + ("r-dplyr" ,r-dplyr) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-iranges" ,r-iranges) + ("r-readr" ,r-readr) + ("r-regioner" ,r-regioner) + ("r-reshape2" ,r-reshape2) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://bioconductor.org/packages/annotatr/") + (synopsis "Annotation of genomic regions to genomic annotations") + (description + "Given a set of genomic sites/regions (e.g. ChIP-seq peaks, CpGs, +differentially methylated CpGs or regions, SNPs, etc.) it is often of interest +to investigate the intersecting genomic annotations. Such annotations include +those relating to gene models (promoters, 5'UTRs, exons, introns, and 3'UTRs), +CpGs (CpG islands, CpG shores, CpG shelves), or regulatory sequences such as +enhancers. The annotatr package provides an easy way to summarize and +visualize the intersection of genomic sites/regions with genomic +annotations.") + (license license:gpl3))) |